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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57719.1
DDBJ      :             putative transposase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  79/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.55.3
:249 amino acids
:PSIPRED
:DISOPRED
:HMM:SCOP  64->232 1c6vA_ c.55.3.2 * 4.5e-09 18.2 %
:RPS:PFM   134->186 PF03184 * DDE 1e-07 43.4 %
:HMM:PFM   67->190 PF00665 * rve 3.3e-11 18.6 102/120  
:BLT:SWISS 2->196 YIS5_SHISO 8e-14 29.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57719.1 GT:GENE BAD57719.1 GT:PRODUCT putative transposase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3058675..3059424 GB:FROM 3058675 GB:TO 3059424 GB:DIRECTION + GB:PRODUCT putative transposase GB:PROTEIN_ID BAD57719.1 LENGTH 249 SQ:AASEQ MWSLSKLVEVLRLNGIADISRETLRVILKAGGVSWQSTKTWKSSNDPEFVAKMSRVLDLYDNPPADGRVICVDEFGPLNLLPRAGRGWFGTGRTKWLRATYHRTQGVRHMFGALDLRSGQLYYRIRDRKRWMEFLSFLKSLRARWPGEKLYLICDNYSVHKRPEVRAWCADNDVELVFLPTYSSWLNRIECEFAALRYFALNGTDHRSHAEQDAAIGDYIRWRNRHAGPIRDFAVASKIRRPDYLPNVA GT:EXON 1|1-249:0| BL:SWS:NREP 1 BL:SWS:REP 2->196|YIS5_SHISO|8e-14|29.5|190/100| RP:PFM:NREP 1 RP:PFM:REP 134->186|PF03184|1e-07|43.4|53/204|DDE| HM:PFM:NREP 1 HM:PFM:REP 67->190|PF00665|3.3e-11|18.6|102/120|rve| GO:PFM:NREP 1 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF03184|IPR004875| HM:SCP:REP 64->232|1c6vA_|4.5e-09|18.2|137/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 328 OP:NHOMOORG 79 OP:PATTERN -------------------------------------------------------------------- ----1---111--------------9----------1-A1-1-F----------------67--2-C334-------------------------------------------------------------------------------------------------1--------------------------------------------------3------------------------------------------------------------------------------------------------------------2------------------------------C-----------------2----------J-1I--------------1-----13----1----1--2--11--5-----------------------------------------------------------------------1-----------33-4-1-----21--------9-1-I1--2-1E--4----------------2---------------------1--1---1----2----------------------------X4-1-----------------1-3--1-----------------21------------------1--------------------D--3--1-----1-1--1-21-2--L--------------------------------------------------------------------1-----1--------------------------------251------1-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 247-249| PSIPRED cccHHHHHHHHHHHccccccHHHHHHHHHHccccEEccccccccccHHHHHHHHHHHHHHHHccccccEEEEEccccHHHcccccccccccccccEEEEccccccEEEEEEEEEEEcccEEEEEEEccccHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccEEEEEccHHHHccccccccc //