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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57721.1
DDBJ      :             putative two-component system response regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  214/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.229.1a.4.6c.23.1
:223 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->184 1a04A PDBj 3e-12 32.1 %
:RPS:PDB   13->218 3c3wA PDBj 6e-12 23.4 %
:RPS:SCOP  58->160 1xn8A  a.229.1.1 * 7e-07 8.1 %
:RPS:SCOP  136->222 1p4wA  a.4.6.2 * 4e-11 17.1 %
:HMM:SCOP  7->146 1a04A2 c.23.1.1 * 5.4e-09 23.1 %
:HMM:SCOP  131->222 1p4wA_ a.4.6.2 * 2.7e-09 33.3 %
:RPS:PFM   152->200 PF00196 * GerE 5e-04 38.8 %
:HMM:PFM   152->194 PF00196 * GerE 2.2e-10 37.2 43/58  
:HMM:PFM   13->124 PF00072 * Response_reg 9.3e-09 21.5 107/112  
:BLT:SWISS 8->184 NARL_SHIFL 2e-11 33.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57721.1 GT:GENE BAD57721.1 GT:PRODUCT putative two-component system response regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3061213..3061884) GB:FROM 3061213 GB:TO 3061884 GB:DIRECTION - GB:PRODUCT putative two-component system response regulator GB:PROTEIN_ID BAD57721.1 LENGTH 223 SQ:AASEQ MTGEPTTPVTAAIIDDHEVVHDGIAGWCATAQPPIILKGNYHNPGDFLTDPACDPTTIDAVVLDLQFDQRAPDLSALTTLCQRGFRVLVFSQHTRSDIILDCLELGAVTYLSKAKGREHLVAAIHAARSDRPYLSPTMAQAMTEDTRHTRPALSPREREVLLAWFQTESKTLVGQRLYITTGTVNTHLERIRTKYAQAGRPAPTKAALVARAIQDGLITADEL GT:EXON 1|1-223:0| BL:SWS:NREP 1 BL:SWS:REP 8->184|NARL_SHIFL|2e-11|33.3|168/216| BL:PDB:NREP 1 BL:PDB:REP 8->184|1a04A|3e-12|32.1|168/205| RP:PDB:NREP 1 RP:PDB:REP 13->218|3c3wA|6e-12|23.4|197/211| RP:PFM:NREP 1 RP:PFM:REP 152->200|PF00196|5e-04|38.8|49/57|GerE| HM:PFM:NREP 2 HM:PFM:REP 152->194|PF00196|2.2e-10|37.2|43/58|GerE| HM:PFM:REP 13->124|PF00072|9.3e-09|21.5|107/112|Response_reg| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00196|IPR000792| GO:PFM GO:0005622|"GO:intracellular"|PF00196|IPR000792| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00196|IPR000792| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00196|IPR000792| RP:SCP:NREP 2 RP:SCP:REP 58->160|1xn8A|7e-07|8.1|99/131|a.229.1.1| RP:SCP:REP 136->222|1p4wA|4e-11|17.1|82/87|a.4.6.2| HM:SCP:REP 7->146|1a04A2|5.4e-09|23.1|134/0|c.23.1.1|1/1|CheY-like| HM:SCP:REP 131->222|1p4wA_|2.7e-09|33.3|87/0|a.4.6.2|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 281 OP:NHOMOORG 214 OP:PATTERN -------------------------------------------------------------------- --2-4212111---11111-13--14111111212137551-1-22---3332112-1--1-1-411-41------------1------------------1---1-1-----------------------------1112---2--111111-----------2--11------------------------1-----------------111---1---1--1------12---------------1--------11----------1---------------------------------------------------------------------------------1----------11---------1-----------1------------11111111111-------------111-11-121-------1------11-----------------------------------------------------------------------1-----1---1311--22122111-1-111---1-11-----------122---1------2----------11--11--112----------------------------------1-1---------------------------1--------11---1111121211-111111111112111111----22111----------------11111111--1-------------1----------------------------------------------11-121111-111----------111111111---1111---------------------------------------------------------------------2- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 214 STR:RPRED 96.0 SQ:SECSTR ####cEccEEEEEEcccHHHHHHHHHHHHTTcTTEEEEEEEccHHHHHHHHHHccHHccEEEEccEETEEHHHHHHHHHHHcTTcEEEEGGGcccHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHcTTTTccHHHHHHHHHHHTTccHHHHHHHHTccHHHHHHHHHHHHHHTTccccccccHHHHHHHHHHHTTT##### DISOP:02AL 1-5, 8-9, 148-150, 222-223| PSIPRED ccccccccEEEEEEcccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHcccccEEEEEccccHHHHHHHHHccccEEEEccccHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccc //