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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57732.1
DDBJ      :             putative transposase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  51/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.55.3
:348 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   195->333 2b4jA PDBj 6e-09 11.4 %
:RPS:SCOP  22->122 1pdnC  a.4.1.5 * 7e-10 28.9 %
:RPS:SCOP  195->324 1b92A  c.55.3.2 * 2e-06 13.2 %
:HMM:SCOP  7->129 1pdnC_ a.4.1.5 * 7.5e-19 32.5 %
:HMM:SCOP  152->349 1c6vA_ c.55.3.2 * 1.6e-27 32.5 %
:RPS:PFM   195->293 PF00665 * rve 8e-09 37.9 %
:HMM:PFM   151->295 PF00665 * rve 5.5e-29 44.0 116/120  
:HMM:PFM   92->134 PF01498 * Transposase_5 1.2e-08 32.6 43/72  
:HMM:PFM   36->64 PF05344 * DUF746 2.3e-05 31.0 29/65  
:BLT:SWISS 40->348 YAGA_ECOLI 6e-15 30.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57732.1 GT:GENE BAD57732.1 GT:PRODUCT putative transposase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3070716..3071762) GB:FROM 3070716 GB:TO 3071762 GB:DIRECTION - GB:PRODUCT putative transposase GB:PROTEIN_ID BAD57732.1 LENGTH 348 SQ:AASEQ MKRQLPRPPQAERTAVIHRNAPLTVEGRYRLVQRCQVRPIAHVAAEMGLSRQCASKWVNRFRRFGELGLIDRSSVPHRSPAATPAETIVRIEQLRRERKWSARRIATELRAEGMTISVRTVSRHLHRLGLNRRRFLDPAGASNRAPRRIIAHRPGHMVHIDVKKVGRIPDGGGWRVHGKGSDRDKAVARAKKRGTRTGYVFLHTAVDGFSRLAYTEALPDEKALTAIGFVFRARAFFAAHGISRIQRIVTDNGACYRAADFSKVLLGARHQRINPYTPRHNGKVERYHRILAEEFLYAREWTSETQRTDALGIWNIHYNYHRPHTAAGNRPPASRLHTGVTNVTASYT GT:EXON 1|1-348:0| BL:SWS:NREP 1 BL:SWS:REP 40->348|YAGA_ECOLI|6e-15|30.4|270/384| SEG 123->136|rhlhrlglnrrrfl| SEG 229->239|fvfraraffaa| RP:PDB:NREP 1 RP:PDB:REP 195->333|2b4jA|6e-09|11.4|123/135| RP:PFM:NREP 1 RP:PFM:REP 195->293|PF00665|8e-09|37.9|95/116|rve| HM:PFM:NREP 3 HM:PFM:REP 151->295|PF00665|5.5e-29|44.0|116/120|rve| HM:PFM:REP 92->134|PF01498|1.2e-08|32.6|43/72|Transposase_5| HM:PFM:REP 36->64|PF05344|2.3e-05|31.0|29/65|DUF746| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00665|IPR001584| GO:PFM GO:0015074|"GO:DNA integration"|PF00665|IPR001584| RP:SCP:NREP 2 RP:SCP:REP 22->122|1pdnC|7e-10|28.9|97/123|a.4.1.5| RP:SCP:REP 195->324|1b92A|2e-06|13.2|114/144|c.55.3.2| HM:SCP:REP 7->129|1pdnC_|7.5e-19|32.5|120/0|a.4.1.5|1/1|Homeodomain-like| HM:SCP:REP 152->349|1c6vA_|1.6e-27|32.5|157/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 479 OP:NHOMOORG 51 OP:PATTERN -------------------------------------------------------------------- B----------2-2-74----1--71-------9-83-1-------14-2*1--274------1---39--------------------------------------3---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2----------1-22121211--1-3------1------1-------5-------------------------------------------------------------------9*--12-3------------------------------J----1-3-------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------1--------------------------------------55----------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 143 STR:RPRED 41.1 SQ:SECSTR ##################################################################################################################################################################################################EEETTEEEEEEEETTTTEEEEEEEccccHHHHHHHHHHHHHHccccEEEccccHHHHcHHHHHHHHHHTcEEEccHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHTTccccccHHHHHHHHHHHccHHHHHHHHHHHHHHH########### DISOP:02AL 1-11, 71-80, 344-348| PSIPRED ccccccccHHHccHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHccHHHHcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccEEcccccEEEEEEEEcccccccccEEEEcccccccccccccccccccccEEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHcEEEEEcccccHHcccEEHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHcccccHHHHcccccccccccc //