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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57754.1
DDBJ      :             putative DNA ligase
Swiss-Prot:DNLJ1_NOCFA  RecName: Full=DNA ligase 1;         EC=6.5.1.2;AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1;

Homologs  Archaea  6/68 : Bacteria  897/915 : Eukaryota  12/199 : Viruses  1/175   --->[See Alignment]
a.60.2b.40.4c.15.1d.142.2
:663 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->539 2owoA PDBj 3e-69 34.7 %
:BLT:PDB   585->650 2k6gA PDBj 3e-05 36.7 %
:RPS:PDB   1->655 1dgtB PDBj e-110 35.3 %
:RPS:SCOP  3->298 1b04A  d.142.2.2 * 3e-40 29.5 %
:RPS:SCOP  297->374 1dgsA2  b.40.4.6 * 2e-14 50.0 %
:RPS:SCOP  386->542 1dgsA1  a.60.2.2 * 3e-21 37.7 %
:RPS:SCOP  582->663 1cdzA  c.15.1.1 * 4e-09 15.8 %
:HMM:SCOP  1->298 1b04A_ d.142.2.2 * 5.3e-73 40.1 %
:HMM:SCOP  297->382 1dgsA2 b.40.4.6 * 2.6e-24 48.8 %
:HMM:SCOP  384->565 1dgsA1 a.60.2.2 * 8.4e-46 41.9 %
:HMM:SCOP  572->655 1l7bA_ c.15.1.2 * 1.1e-07 34.2 %
:RPS:PFM   3->298 PF01653 * DNA_ligase_aden 2e-33 37.6 %
:RPS:PFM   302->371 PF03120 * DNA_ligase_OB 1e-16 61.4 %
:RPS:PFM   582->650 PF00533 * BRCT 7e-04 38.7 %
:HMM:PFM   3->298 PF01653 * DNA_ligase_aden 1.2e-71 39.0 295/315  
:HMM:PFM   301->380 PF03120 * DNA_ligase_OB 5e-30 51.9 79/82  
:HMM:PFM   542->615 PF01614 * IclR 4e-06 26.0 73/129  
:HMM:PFM   388->414 PF03119 * DNA_ligase_ZBD 4.2e-06 44.4 27/28  
:HMM:PFM   515->543 PF00633 * HHH 8.1e-05 37.9 29/30  
:BLT:SWISS 1->663 DNLJ1_NOCFA 0.0 100.0 %
:PROS 105->134|PS01055|DNA_LIGASE_N1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57754.1 GT:GENE BAD57754.1 GT:PRODUCT putative DNA ligase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3089136..3091127 GB:FROM 3089136 GB:TO 3091127 GB:DIRECTION + GB:PRODUCT putative DNA ligase GB:PROTEIN_ID BAD57754.1 LENGTH 663 SQ:AASEQ MDAGERIRELADRIVELRTAYYEGAPLVADAEYDAVEDELRALIAAHPELAPDPNPLDQVGAPAVLHAPVRHSRPMLSLEKATTPEQVAAFFERFPGQPVVVMPKLDGLSLALVYEDGRLVRAVTRGDGTTGDDVTMLVRALVDGVPEQIDVPGRVEVRGEAVMLRSTFLAYNAAHPDKPLINPRNAAAGTLRAKDPATVAERRLRFFGFDLDTAEGGAAADLGEGLRALGIAGAAMRMCADAEQAQAAITDIERGRNDLDYDIDGAVLRLADRDAYAAAGTRSNSPRGALAFKFAAEEKTTVLEAVTWDVGKTGKIVPVARLEPVFVGGTTVTKATLANQQVIRARDIKVGDTVLVRRAGDVIPFVAGVLDASKRTGAEVEIVPPTECPSCGQPVTEQGNSRELFCTNASCPAQTVRRLIHWASRAAADIDAIGGVWIERLAEAGILENPSDFYTLTKERLLEFDRIGEVSATRMIESIDRSRDVGLRRALIGLAIPMASEGTAARLARAGFASLEEVADAGEERLVAVEDIGPKVAASLVEHLTRLRPELERLRERGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKVARPTFQRLCEKAGATAASSVSANTDLLITGAGVGESKLAKAEKLGVEIVDQATIWAQLIEAKLV GT:EXON 1|1-663:0| SW:ID DNLJ1_NOCFA SW:DE RecName: Full=DNA ligase 1; EC=6.5.1.2;AltName: Full=Polydeoxyribonucleotide synthase [NAD+] 1; SW:GN Name=ligA1; OrderedLocusNames=NFA_29070; SW:KW Complete proteome; DNA damage; DNA repair; DNA replication; Ligase;Magnesium; Manganese; Metal-binding; NAD; Zinc. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->663|DNLJ1_NOCFA|0.0|100.0|663/663| GO:SWS:NREP 5 GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| PROS 105->134|PS01055|DNA_LIGASE_N1|PDOC00809| SEG 121->136|vravtrgdgttgddvt| SEG 211->231|dldtaeggaaadlgeglralg| SEG 267->280|avlrladrdayaaa| SEG 543->558|ehltrlrpelerlrer| SEG 569->581|lppvvaagaplag| BL:PDB:NREP 2 BL:PDB:REP 7->539|2owoA|3e-69|34.7|530/586| BL:PDB:REP 585->650|2k6gA|3e-05|36.7|60/109| RP:PDB:NREP 1 RP:PDB:REP 1->655|1dgtB|e-110|35.3|634/660| RP:PFM:NREP 3 RP:PFM:REP 3->298|PF01653|2e-33|37.6|295/314|DNA_ligase_aden| RP:PFM:REP 302->371|PF03120|1e-16|61.4|70/82|DNA_ligase_OB| RP:PFM:REP 582->650|PF00533|7e-04|38.7|62/76|BRCT| HM:PFM:NREP 5 HM:PFM:REP 3->298|PF01653|1.2e-71|39.0|295/315|DNA_ligase_aden| HM:PFM:REP 301->380|PF03120|5e-30|51.9|79/82|DNA_ligase_OB| HM:PFM:REP 542->615|PF01614|4e-06|26.0|73/129|IclR| HM:PFM:REP 388->414|PF03119|4.2e-06|44.4|27/28|DNA_ligase_ZBD| HM:PFM:REP 515->543|PF00633|8.1e-05|37.9|29/30|HHH| GO:PFM:NREP 5 GO:PFM GO:0003911|"GO:DNA ligase (NAD+) activity"|PF01653|IPR013839| GO:PFM GO:0003911|"GO:DNA ligase (NAD+) activity"|PF03120|IPR004150| GO:PFM GO:0006260|"GO:DNA replication"|PF03120|IPR004150| GO:PFM GO:0006281|"GO:DNA repair"|PF03120|IPR004150| GO:PFM GO:0005622|"GO:intracellular"|PF00533|IPR001357| RP:SCP:NREP 4 RP:SCP:REP 3->298|1b04A|3e-40|29.5|295/310|d.142.2.2| RP:SCP:REP 297->374|1dgsA2|2e-14|50.0|78/86|b.40.4.6| RP:SCP:REP 386->542|1dgsA1|3e-21|37.7|154/181|a.60.2.2| RP:SCP:REP 582->663|1cdzA|4e-09|15.8|76/96|c.15.1.1| HM:SCP:REP 1->298|1b04A_|5.3e-73|40.1|297/312|d.142.2.2|1/1|DNA ligase/mRNA capping enzyme, catalytic domain| HM:SCP:REP 297->382|1dgsA2|2.6e-24|48.8|86/86|b.40.4.6|1/1|Nucleic acid-binding proteins| HM:SCP:REP 384->565|1dgsA1|8.4e-46|41.9|179/181|a.60.2.2|1/1|RuvA domain 2-like| HM:SCP:REP 572->655|1l7bA_|1.1e-07|34.2|76/92|c.15.1.2|1/1|BRCT domain| OP:NHOMO 994 OP:NHOMOORG 916 OP:PATTERN ------------------------1--11111------------------------------------ 1111111111111111-11-11111111111111112111111111111111121111111111211122111111111111111111111111111--111111111111111111111111111111112111111111111111111111111111111111111111-111---1-11-21111--111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111-11112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111211111111111111111111111111111111-11111-1111111221112222222222-222222222222222222112121111222222222221212211-1222211211111111111111111111111111121111111111111111111111111111111122222121212121111111111111111111111111111111111111111111111111111111111111111-11111111111111211111111111111121 -1--11---------------------------------------------------------------------------------------------------------------------------------------------------------------------------114111--1------11----- ----------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------- STR:NPRED 663 STR:RPRED 100.0 SQ:SECSTR GGHHHHHHHHHHHHHHHHHHHHTccccccTTHHHHHHHHHHHHHHHcGGGccTTcGGGccTTccccccEEEcccccccccEEccHHHHHHHHHTTcccEEEEEEEcccEEEEEEEETTEEEEEcccccEEEccHHHHTTTTccTTcccccccccEEEEEEEEEccHHHHHHHHHHTTccccccHHHHHHHHHccccTHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHcEEEEEHHHHHHHHHHHHHHTGGGccccccEEEEEEccGGGTTTccccccccccEEEEEccccEEEEEccEEEEEEcTTccEEEEEEEEEEEccccEEEEEEccccTTTTTTTccTTcEEEEEcTTccccEEEEEcETTcccccccccccccccTTTccccccccccTEcccccTTcTTcHHHHHHHHccTTccccTTccHHHHHHHHTTTccccTTTTcccccHHHHTTcccccHHHHHHHHHHHTGGGccHHHHHHHHTcTTccTTHHHHHHHcHHccHHHHHTccHHHHcccccccHHHHHHHHHHHHcHHHHHHHHHHHTTTccccccccHHHHccccTTccccccccccccccTTTccTTTTHHHHcccccccccccccccccccccccTTTcHccccccTTTccccccccccTTHHHTTccc DISOP:02AL 663-664| PSIPRED ccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccEEccccHHHccccccccccccHHHcccHHHHHHHHHHcccccEEEEEEccEEEEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHcccccccccEEEEEEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHcccEEEEEEccccccccHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHcccccccccEEEEEEccccEEEEEEEEEEEEEcccEEEEEEEEEEEEEEccEEEEEEEcccHHHHHHcccccccEEEEEEccccccEEcccccHHHcccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHcccccHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEccccccccccHHHHHHHHHHcccEEEEcccccccEEEEcccccHHHHHHHHHcccEEEcHHHHHHHHHHcccc //