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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57768.1
DDBJ      :             putative membrane protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  118/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
f.35.1
:697 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  543->697 1iwgA7  f.35.1.1 * 3e-06 18.6 %
:HMM:SCOP  142->347 1iwgA7 f.35.1.1 * 1.2e-23 30.6 %
:HMM:SCOP  483->697 1iwgA7 f.35.1.1 * 3.5e-23 29.1 %
:RPS:PFM   151->281 PF03176 * MMPL 8e-17 39.1 %
:RPS:PFM   490->697 PF03176 * MMPL 1e-15 32.2 %
:HMM:PFM   50->384 PF03176 * MMPL 1.5e-41 26.9 316/333  
:HMM:PFM   487->694 PF03176 * MMPL 3e-25 27.8 198/333  
:BLT:SWISS 9->695 MMPL3_MYCTU e-110 38.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57768.1 GT:GENE BAD57768.1 GT:PRODUCT putative membrane protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3102955..3105048 GB:FROM 3102955 GB:TO 3105048 GB:DIRECTION + GB:PRODUCT putative membrane protein GB:PROTEIN_ID BAD57768.1 LENGTH 697 SQ:AASEQ MLHAGSLRWGRFVHRHRFLVLAVVAVAVLLSGWYGRDLNQRFTQEGWFDEASESVAAAKLADSTFGRDTDSDLILLYTAPAGRTVDDAEVRGPVTAHLADLLARYPDRILKIDSYWDSPFAAQATDASRTHAFASVGLRGDGTATVENYLAIKDALAANDPGGGPGGTTVQLAGLQPIVEGINIGMQTDIHRAELIALPLVAILLYFVFGGVIGALLPVLIGGMTILGTQGILRALTDHIDVNVFANAVMTLVSLGLAIDYGLFTVTRFREELAAGRSVEEATARTVATAGRTVLFSAAIIAVSLAALFIFPNGVLRSVPYGGISSVLLAAALSVTALPAALAIVGRHIDFLGWHRFARGKTDAEIDAGFFSRLARFAMRRPWAVSVSIVLALLALAIPLRHIEFGGISERYLAQDNPARVAQERFDELFPGFRTEPLKLVVVGADAAQLGEIRHAANQVPGLTGRFEPAAATTDGINVLNAGLVDKRDADAVIAALRAIPEPPGVQVMVAGVPALERDSINGLLEGLPALLAILVTTALLIMYAAFRSVVLAVKAVVMSALSLLTTLGILTWIFVEGHGAGLFDFTPGPLMFAVLALIVTVIFGLSTDYEVFLLSRVAEARAGGADPPEAIRYGIAHTGSVITSAAAILIVVTGAFGFSDLVLMKYIAYGMIAALLIDATVIRLLLTPAVLKLIWR GT:EXON 1|1-697:0| BL:SWS:NREP 1 BL:SWS:REP 9->695|MMPL3_MYCTU|e-110|38.8|681/944| TM:NTM 11 TM:REGION 17->38| TM:REGION 191->213| TM:REGION 244->266| TM:REGION 291->313| TM:REGION 326->348| TM:REGION 382->404| TM:REGION 522->544| TM:REGION 552->574| TM:REGION 587->608| TM:REGION 640->662| TM:REGION 673->695| SEG 19->30|lvlavvavavll| SEG 282->311|atartvatagrtvlfsaaiiavslaalfif| SEG 325->343|ssvllaaalsvtalpaala| SEG 384->398|avsvsivlallalai| SEG 523->542|glleglpallailvttalli| RP:PFM:NREP 2 RP:PFM:REP 151->281|PF03176|8e-17|39.1|128/284|MMPL| RP:PFM:REP 490->697|PF03176|1e-15|32.2|198/284|MMPL| HM:PFM:NREP 2 HM:PFM:REP 50->384|PF03176|1.5e-41|26.9|316/333|MMPL| HM:PFM:REP 487->694|PF03176|3e-25|27.8|198/333|MMPL| GO:PFM:NREP 2 GO:PFM GO:0016020|"GO:membrane"|PF03176|IPR004869| GO:PFM GO:0016020|"GO:membrane"|PF03176|IPR004869| RP:SCP:NREP 1 RP:SCP:REP 543->697|1iwgA7|3e-06|18.6|140/199|f.35.1.1| HM:SCP:REP 142->347|1iwgA7|1.2e-23|30.6|196/200|f.35.1.1|1/2|Multidrug efflux transporter AcrB transmembrane domain| HM:SCP:REP 483->697|1iwgA7|3.5e-23|29.1|196/200|f.35.1.1|2/2|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 321 OP:NHOMOORG 122 OP:PATTERN -----------------1----1--------------------------------------------- ----9224333413A4544-49226553555486687546155C32211221311111--23514237971-----------1----------------------------------------------------------111-1-------------------------------------111-------2111111111111111--11-2111---1-11-------2-111111111111111-112---------------------1---------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------1-----------------------------------------------------------------------------------------------------3------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-2, 40-68, 117-130, 356-370, 483-491| PSIPRED ccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHccHHEEEcccccccccHHHcccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccHHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //