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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57774.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  42/68 : Bacteria  625/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
f.22.1
:382 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   208->367 2nq2B PDBj 1e-16 31.4 %
:RPS:SCOP  93->373 1l7vA  f.22.1.1 * 4e-40 24.5 %
:HMM:SCOP  32->374 1l7vA_ f.22.1.1 * 5.6e-78 42.9 %
:RPS:PFM   173->373 PF01032 * FecCD 2e-35 43.3 %
:HMM:PFM   54->373 PF01032 * FecCD 2.4e-93 43.2 310/311  
:BLT:SWISS 173->371 BTUC_VIBPA 1e-31 36.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57774.1 GT:GENE BAD57774.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3108635..3109783) GB:FROM 3108635 GB:TO 3109783 GB:DIRECTION - GB:PRODUCT putative transporter GB:PROTEIN_ID BAD57774.1 LENGTH 382 SQ:AASEQ MSAPRPAPELTDRTGARLASTAAPVAGPEAAGPVPRGRTRSRAVIAFAVAVLALVALALASATIGQVPTTPAEVLGSVLHRIGLDWGPMPAHPAGDVTLWEVRFPRVLLAMLVGAALATAGALLQGVFANPLAEPGVIGVSSGAAVGAGATIVLGGAFVAAWSVAAAAFVAGLLTTMLVYVLARANGRTEVVTLVLTGVAINAFAGGLIAFLLFVASPAARDQIVFWQLGSLNGATWESVGVVAILTACGVAAAVLVAPRLDLLALGESAARHLGVDVERLRRNVIVIVAVLATAGVAFTGIIMFVGLIVPHLVRMIVGPAHRVLIPLSAVVGAVVLLAADVGARSLVDNADLPLGMLTSLVGGPFFFWLLRRTRARAGGWG GT:EXON 1|1-382:0| BL:SWS:NREP 1 BL:SWS:REP 173->371|BTUC_VIBPA|1e-31|36.0|197/331| TM:NTM 9 TM:REGION 43->65| TM:REGION 105->127| TM:REGION 136->158| TM:REGION 165->187| TM:REGION 193->215| TM:REGION 242->264| TM:REGION 285->307| TM:REGION 322->344| TM:REGION 350->371| SEG 22->35|aapvagpeaagpvp| SEG 43->62|aviafavavlalvalalasa| SEG 107->127|vllamlvgaalatagallqgv| SEG 136->172|gvigvssgaavgagativlggafvaawsvaaaafvag| SEG 330->344|avvgavvllaadvga| BL:PDB:NREP 1 BL:PDB:REP 208->367|2nq2B|1e-16|31.4|159/300| RP:PFM:NREP 1 RP:PFM:REP 173->373|PF01032|2e-35|43.3|201/313|FecCD| HM:PFM:NREP 1 HM:PFM:REP 54->373|PF01032|2.4e-93|43.2|310/311|FecCD| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF01032|IPR000522| GO:PFM GO:0006810|"GO:transport"|PF01032|IPR000522| GO:PFM GO:0016020|"GO:membrane"|PF01032|IPR000522| RP:SCP:NREP 1 RP:SCP:REP 93->373|1l7vA|4e-40|24.5|278/324|f.22.1.1| HM:SCP:REP 32->374|1l7vA_|5.6e-78|42.9|324/324|f.22.1.1|1/1|ABC transporter involved in vitamin B12 uptake, BtuC| OP:NHOMO 2280 OP:NHOMOORG 669 OP:PATTERN --2--------------1---112222213211--221212121164854C81-2221342111---- ----25448895541------1---3----------3C46-3121211323-621--51123-885436D4--------1221-----3221-222-----11111122----------------13122111223144221137-5-2222-11--------42-1451-------------2432222-167CCDCDBCC5DCDDDC8799A9DDD477A654333333EG266666665666666433433-1----1---33-1--2--------22233331--111111111112333333333333222---222223A458888798595132227562511-321-2A92--312223222-5-41-111111111221--2335443422222222224-32-21123222-4776443455741112123B111132-22222222-331--33------------------------------111-21222123333312222111-2222124111112--111-2111212112111-1-1421111111--1-11-66221123-3111----1---34111111341252-11112----------211--22343231112211222121321121232222---1121------E455285688A699964-768488A4867A766656398A997744254444444454544744855563-555555545555--2-----------175C111142--1--1--5--11-11-233123222425323221445---------15224333336483311---------------111------------5---------------------------1121122222-1- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 178 STR:RPRED 46.6 SQ:SECSTR #################################################################################################################################################################################################HHHHHHHHHHHHHHHHHHHHHTccTTTHHHHHHHHccccTTccHHHHHHHHHHHHHHHHHHHHTTTGGGGGGccHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHccccccTTTHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH########### DISOP:02AL 1-38, 378-382| PSIPRED ccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccc //