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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57785.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  171/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.181.1a.6.1
:245 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->90 1r8dB PDBj 1e-15 37.8 %
:BLT:PDB   145->235 1ny9A PDBj 2e-09 34.1 %
:RPS:PDB   2->227 3d70A PDBj 1e-19 14.1 %
:RPS:SCOP  2->92 1jbgA  a.6.1.3 * 6e-16 37.4 %
:RPS:SCOP  145->235 1ny9A  a.181.1.1 * 2e-05 31.1 %
:HMM:SCOP  2->92 1jbgA_ a.6.1.3 * 4.4e-21 41.8 %
:HMM:SCOP  145->237 1ny9A_ a.181.1.1 * 4.2e-25 33.3 %
:RPS:PFM   119->230 PF07739 * TipAS 2e-12 39.3 %
:HMM:PFM   117->231 PF07739 * TipAS 1.7e-33 38.3 115/122  
:HMM:PFM   31->88 PF09278 * MerR-DNA-bind 5.9e-12 39.7 58/65  
:HMM:PFM   2->26 PF00376 * MerR 4e-09 48.0 25/38  
:HMM:PFM   92->107 PF07813 * LTXXQ 0.00039 37.5 16/23  
:BLT:SWISS 1->235 TIPA_STRLI 3e-33 33.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57785.1 GT:GENE BAD57785.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3119178..3119915) GB:FROM 3119178 GB:TO 3119915 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57785.1 LENGTH 245 SQ:AASEQ MRALHHWDEIGLAPPTLRTATGYRLYTGADLQRLHRIVVYRELGLGLDRIRAVLDDSATEVPAALRAQRAQVRERIARLEQLAAGLDRMIEAHERGLLLTAEQQAALFGPRWDPGWAAEARRRYGAGPQWQQFAERAATRSPEDWQAVAAEMTDLEQALGAAMDAGVAPGSPEANDLVDRHRAIFGAYFPIDRAQQVCLGRMFDTDPGFTAHYDGIRAGLASWLRRSIDAAARAHGIDPDTATWQ GT:EXON 1|1-245:0| BL:SWS:NREP 1 BL:SWS:REP 1->235|TIPA_STRLI|3e-33|33.2|235/253| BL:PDB:NREP 2 BL:PDB:REP 1->90|1r8dB|1e-15|37.8|90/107| BL:PDB:REP 145->235|1ny9A|2e-09|34.1|91/94| RP:PDB:NREP 1 RP:PDB:REP 2->227|3d70A|1e-19|14.1|220/276| RP:PFM:NREP 1 RP:PFM:REP 119->230|PF07739|2e-12|39.3|112/121|TipAS| HM:PFM:NREP 4 HM:PFM:REP 117->231|PF07739|1.7e-33|38.3|115/122|TipAS| HM:PFM:REP 31->88|PF09278|5.9e-12|39.7|58/65|MerR-DNA-bind| HM:PFM:REP 2->26|PF00376|4e-09|48.0|25/38|MerR| HM:PFM:REP 92->107|PF07813|0.00039|37.5|16/23|LTXXQ| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF07739|IPR012925| GO:PFM GO:0016481|"GO:negative regulation of transcription"|PF07739|IPR012925| GO:PFM GO:0030528|"GO:transcription regulator activity"|PF07739|IPR012925| RP:SCP:NREP 2 RP:SCP:REP 2->92|1jbgA|6e-16|37.4|91/106|a.6.1.3| RP:SCP:REP 145->235|1ny9A|2e-05|31.1|90/94|a.181.1.1| HM:SCP:REP 2->92|1jbgA_|4.4e-21|41.8|91/106|a.6.1.3|1/1|Putative DNA-binding domain| HM:SCP:REP 145->237|1ny9A_|4.2e-25|33.3|93/94|a.181.1.1|1/1|Antibiotic binding domain of TipA-like multidrug resistance regulators| OP:NHOMO 196 OP:NHOMOORG 172 OP:PATTERN -------------------------------------------------------------------- -11-11111111-1-------1--11-----111111311----1111------1--1--22----1142---------12-------------------------1--1-------------------------------11---1-------------------1111----------------------111111112111111112133-1111-11-1-111111132-------------------11-------------------------11111111111--11-----1-------------1----------2111111111111-1111-11-11---2----221------1-------1------------------------111111-11----------1-------1--------------1----------------------------------------------------------------111111-----11--11111121-----------1-----------------------------------------------1------1----11-------------------------------------------------------------------------1------------------------------------------1----------------1------------------------------1111--1-------------------11---------------------2---------------------------1------------------------------------------------------------------------ -------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 235 STR:RPRED 95.9 SQ:SECSTR HHHHHHHHHTTccccEEcTTTccEEEcGGGGGHHHHHHHHHHHTccHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccEEEEEEccEEEEEEEcTTccTTTccGGGGHHHHHHHHHHHccccccEEEHHHHHHEEcccccccGGGccccEEEEEcccccccTTccTTcEEEEEccEEEEEEEEEccHHHHHHHHHHHHHHTHHHHHHHH########## DISOP:02AL 137-141, 240-242| PSIPRED cccHHHHHHccccccccccccccEEccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccc //