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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57787.1
DDBJ      :             putative ATP-dependent DNA ligase
Swiss-Prot:             

Homologs  Archaea  50/68 : Bacteria  238/915 : Eukaryota  59/199 : Viruses  2/175   --->[See Alignment]
b.40.4d.142.2
:320 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   22->316 1vs0B PDBj 1e-38 38.7 %
:RPS:PDB   7->317 2cfmA PDBj 2e-37 27.0 %
:RPS:SCOP  7->196 1fviA2  d.142.2.1 * 6e-22 18.6 %
:RPS:SCOP  200->308 1a0iA1  b.40.4.6 * 4e-19 19.4 %
:HMM:SCOP  1->196 1a0iA2 d.142.2.1 * 1.5e-50 41.2 %
:HMM:SCOP  199->317 1x9nA2 b.40.4.6 * 4.5e-26 35.6 %
:RPS:PFM   25->196 PF01068 * DNA_ligase_A_M 1e-21 40.6 %
:RPS:PFM   220->311 PF04679 * DNA_ligase_A_C 4e-09 48.9 %
:HMM:PFM   20->196 PF01068 * DNA_ligase_A_M 4.6e-35 31.4 175/202  
:HMM:PFM   218->311 PF04679 * DNA_ligase_A_C 1.8e-27 41.3 92/96  
:BLT:SWISS 6->316 Y963_MYCBO 7e-49 40.9 %
:PROS 25->33|PS00697|DNA_LIGASE_A1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57787.1 GT:GENE BAD57787.1 GT:PRODUCT putative ATP-dependent DNA ligase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3121163..3122125) GB:FROM 3121163 GB:TO 3122125 GB:DIRECTION - GB:PRODUCT putative ATP-dependent DNA ligase GB:PROTEIN_ID BAD57787.1 LENGTH 320 SQ:AASEQ MAPAPSPMLATAGRPPEDPRGWAFEMKWDGMRAVADAADGQCLLYSRNGKQVAGSFPEIVEAVAAAVGPHRVVLDGEIIAPEGARGAPSFSRLQRRMHVRAPTPQLIREVPVLYMLFDLLALDGHATVRLPYTERRDLLARLDIARPPLQLSPSWTDVDPAELAAAATDNGLEGLVAKRLDSVYQPGERSRAWLKMPFRRTTEAVIAGWLPGNGPFQKSFGSLVLGAHDAQGRLVHIGNVGTGWKQSERTRLRQRLDEIARPDSPFDVPAPRPVAALAHWVSPELVADIEYREATAEGLRHPSWRGLRIDKDPAEITWPA GT:EXON 1|1-320:0| BL:SWS:NREP 1 BL:SWS:REP 6->316|Y963_MYCBO|7e-49|40.9|296/759| PROS 25->33|PS00697|DNA_LIGASE_A1|PDOC00295| SEG 135->146|rrdllarldiar| BL:PDB:NREP 1 BL:PDB:REP 22->316|1vs0B|1e-38|38.7|274/300| RP:PDB:NREP 1 RP:PDB:REP 7->317|2cfmA|2e-37|27.0|296/545| RP:PFM:NREP 2 RP:PFM:REP 25->196|PF01068|1e-21|40.6|170/201|DNA_ligase_A_M| RP:PFM:REP 220->311|PF04679|4e-09|48.9|88/101|DNA_ligase_A_C| HM:PFM:NREP 2 HM:PFM:REP 20->196|PF01068|4.6e-35|31.4|175/202|DNA_ligase_A_M| HM:PFM:REP 218->311|PF04679|1.8e-27|41.3|92/96|DNA_ligase_A_C| GO:PFM:NREP 9 GO:PFM GO:0003910|"GO:DNA ligase (ATP) activity"|PF01068|IPR012310| GO:PFM GO:0005524|"GO:ATP binding"|PF01068|IPR012310| GO:PFM GO:0006260|"GO:DNA replication"|PF01068|IPR012310| GO:PFM GO:0006281|"GO:DNA repair"|PF01068|IPR012310| GO:PFM GO:0006310|"GO:DNA recombination"|PF01068|IPR012310| GO:PFM GO:0003910|"GO:DNA ligase (ATP) activity"|PF04679|IPR012309| GO:PFM GO:0006260|"GO:DNA replication"|PF04679|IPR012309| GO:PFM GO:0006281|"GO:DNA repair"|PF04679|IPR012309| GO:PFM GO:0006310|"GO:DNA recombination"|PF04679|IPR012309| RP:SCP:NREP 2 RP:SCP:REP 7->196|1fviA2|6e-22|18.6|167/184|d.142.2.1| RP:SCP:REP 200->308|1a0iA1|4e-19|19.4|98/101|b.40.4.6| HM:SCP:REP 1->196|1a0iA2|1.5e-50|41.2|194/0|d.142.2.1|1/1|DNA ligase/mRNA capping enzyme, catalytic domain| HM:SCP:REP 199->317|1x9nA2|4.5e-26|35.6|118/0|b.40.4.6|1/1|Nucleic acid-binding proteins| OP:NHOMO 626 OP:NHOMOORG 349 OP:PATTERN 11111-11-------121111112-1111-11-11--1-----1111111222111111111111111 235-4---------24433-33--343333333547438512-11311-1--252-----224-124322----------1--1-1-------------3-2-21422-1--------------2--------------11----------------111111--------1-------1--------11-1-1---------------112212------1---------12---------------------------------------------------------------------------------------------------------1-------1----1---111-111111111-----1-12115-----2373342221322----------2-11111111381-16624554556822-1-11121221----------111-1-1-------------------------------2231--1--11121111----21251111---22331---11--22212-1-2----1--1-----------112-1--------------111---1--334212---------------------------------------------------------------------------------------------------------------------------------------------------------------1-111------------------------------------11111-22222222122------------------------3222222111-------------------------------------------------------------2- ----11--21--------------------------111111--------------------1----1-----1----------------11-111--11-1----1-1-21-1-----1--1----1-161-114----1-121-1---1------1--21-1---1--21---111-8-11-2-11------2--1- ------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------1-- STR:NPRED 315 STR:RPRED 98.4 SQ:SECSTR ##ccEEcEEEEEccHHHHHccEEEEEEcccEEEEEEEETTEEEEEcTTccccGGGcHHHHHHHHHHccccEEEEEEEEEEccTTcccccTHHHHHHHHccccHHHccHHccEEEEEEEEEEETTEEcTTccHHHHHHHHHHHccccccEEEccEEEcHHHHHHHHHHHHHTccEEEEcTTTccccTTcEEEEEEEEcccccEEEEEEEEEEccGGGTTcEEEEEEEEEcTTccEEEEEEEcccccHHHHHHHHHHGGGEEEEETTEccccccccHTTcEEEccccEEEEEccEEEcccEEccEEEEEcTTccGGGcc### PSIPRED cccccccccccccccccccccEEEEEEEccEEEEEEEEccEEEEEEccccHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEcccccccHHHHHHHHcccccHHHHHHHccEEEEEEEEEEEcccccccccHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHccccEEEEEcccccEEcccccccEEEEEEcccEEEEEEEEEccccccccccEEEEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHEEcccccccccccccccccEEEccccEEEEEEEccccccEEEccEEEEEEccccHHHccccc //