[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57788.1
DDBJ      :             putative hydrolase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  206/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
c.69.1
:235 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   11->232 3f67A PDBj 1e-11 31.4 %
:RPS:PDB   2->233 1dinA PDBj 2e-10 17.5 %
:RPS:SCOP  2->234 1dinA  c.69.1.9 * 7e-16 23.3 %
:HMM:SCOP  2->233 1dinA_ c.69.1.9 * 2e-34 30.2 %
:RPS:PFM   19->229 PF01738 * DLH 1e-13 38.8 %
:HMM:PFM   13->233 PF01738 * DLH 5.7e-44 34.1 211/217  
:BLT:SWISS 6->232 DLHH_YERPE 1e-15 32.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57788.1 GT:GENE BAD57788.1 GT:PRODUCT putative hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3122326..3123033 GB:FROM 3122326 GB:TO 3123033 GB:DIRECTION + GB:PRODUCT putative hydrolase GB:PROTEIN_ID BAD57788.1 LENGTH 235 SQ:AASEQ MQTIDLPAPDGPIEALLARPDTPGPWPGIVIIHDALEFGADIRTHVTMLAERGYLVIAPNLFSRGKARCIRAVMRALWFTGGRNHAEAVPVRDILAARDHLLADPDCTGRTAVAGFCMGGGFALLTAPHGFDAAAPFYPGLYGDYRTLLEGACPVVASYAGLDPSLIGAAGKLDRALTDLGVPHDIKTYPRTTHGFANTFGTERLLRVVGLGHDEAATADAWRRIFAFFDQHLTA GT:EXON 1|1-235:0| BL:SWS:NREP 1 BL:SWS:REP 6->232|DLHH_YERPE|1e-15|32.1|212/267| BL:PDB:NREP 1 BL:PDB:REP 11->232|3f67A|1e-11|31.4|204/237| RP:PDB:NREP 1 RP:PDB:REP 2->233|1dinA|2e-10|17.5|223/233| RP:PFM:NREP 1 RP:PFM:REP 19->229|PF01738|1e-13|38.8|201/213|DLH| HM:PFM:NREP 1 HM:PFM:REP 13->233|PF01738|5.7e-44|34.1|211/217|DLH| GO:PFM:NREP 1 GO:PFM GO:0016787|"GO:hydrolase activity"|PF01738|IPR002925| RP:SCP:NREP 1 RP:SCP:REP 2->234|1dinA|7e-16|23.3|223/233|c.69.1.9| HM:SCP:REP 2->233|1dinA_|2e-34|30.2|222/233|c.69.1.9|1/1|alpha/beta-Hydrolases| OP:NHOMO 259 OP:NHOMOORG 212 OP:PATTERN -----------------1-------------------------------------------------- 1-111----------3222-22112322222211111111-3-1-----11-1221-1--------3-2------------------------------------1-1----------------------------11111-----1112221--22-------1-22-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-1---1--------11---1----------------111111111----111--11----1--1---1--------------------12----------------------------------------21112111111111121111-13-12122-111-1----11-11--------1----------------------------------------1-12-------------------------------------1---1111---1111-1--1---------------1111-211111111111-111-11111111-11111-222-----1-11-1111111111111-11-----111111111111--------------111-----------------------------------1-----11---------------------11---------------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1131-1-------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 235 STR:RPRED 100.0 SQ:SECSTR ETTccEEcTTccEEcEEEEccccccEEEEEEEccTTcccHHHHHHHHHHHHTTcEEEEEcGGGGTcTTccccHHHHHHHHHTccHHHHHHHHHHHHHHHHTcTTEEEEEEEEEETHHHHHHHHHHHHTcccEEEEEccccGGGGGGGGGGccccEEEEEETTcTTccHHHHHHHHHHHTTcTTEEEEEETTccTTTTcTTcTTGGGcHHHcTccHHHHHHHHHHHHHHHGGGcHc PSIPRED cEEEEEEcccEEEEEEEEEccccccccEEEEEcccccccHHHHHHHHHHHHcccEEEEEHHHcccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccEEEEEEcHHHHHHHHHHcccccEEEEEccccccccHHHHcccccEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccc //