[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57792.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  13/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:182 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->58 2vprA PDBj 7e-06 38.5 %
:RPS:PDB   6->182 3c2bB PDBj 3e-12 13.6 %
:RPS:SCOP  2->71 2fbqA1  a.4.1.9 * 5e-13 24.3 %
:HMM:SCOP  2->80 2fbqA1 a.4.1.9 * 1.1e-12 31.6 %
:RPS:PFM   12->56 PF00440 * TetR_N 3e-06 37.8 %
:HMM:PFM   12->55 PF00440 * TetR_N 2.9e-12 34.1 44/47  
:BLT:SWISS 7->81 TETR3_ECOLX 4e-07 38.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57792.1 GT:GENE BAD57792.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3125396..3125944 GB:FROM 3125396 GB:TO 3125944 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57792.1 LENGTH 182 SQ:AASEQ MSRVVTKEQYFDTALEVLAELGFKGLNIGLLCRRLGVTSGSFYHHFGSWQGFVDALLEHWENRQIRILRTLNFNQGNPHDDIAAMADLALGLHHAAEAAIRAWAANDESVNLALKRVDESRRRTVHKAVKGIVGDDATTAVLTSMGMAMLIGYQQIAAGGDDVSLHDLLGQYQRLIYSYTRR GT:EXON 1|1-182:0| BL:SWS:NREP 1 BL:SWS:REP 7->81|TETR3_ECOLX|4e-07|38.8|67/219| SEG 83->105|aamadlalglhhaaeaairawaa| BL:PDB:NREP 1 BL:PDB:REP 7->58|2vprA|7e-06|38.5|52/197| RP:PDB:NREP 1 RP:PDB:REP 6->182|3c2bB|3e-12|13.6|177/192| RP:PFM:NREP 1 RP:PFM:REP 12->56|PF00440|3e-06|37.8|45/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 12->55|PF00440|2.9e-12|34.1|44/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 2->71|2fbqA1|5e-13|24.3|70/79|a.4.1.9| HM:SCP:REP 2->80|2fbqA1|1.1e-12|31.6|79/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 15 OP:NHOMOORG 13 OP:PATTERN -------------------------------------------------------------------- --------------11-----1---1------211112------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 182 STR:RPRED 100.0 SQ:SECSTR ccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHTTccHHHHHHHTccHHHHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHccTTccHHHHHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHTTHHHHTTcccccHHHHHHHHHHHHHHHHcc DISOP:02AL 1-3| PSIPRED ccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcc //