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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57806.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  16/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1e.23.1
:177 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->42 3bjbF PDBj 7e-08 52.6 %
:RPS:PDB   2->175 3c07A PDBj 1e-11 17.1 %
:RPS:SCOP  2->42 1jt0A1  a.4.1.9 * 6e-10 36.6 %
:RPS:SCOP  72->141 1ba3A  e.23.1.1 * 3e-04 14.3 %
:HMM:SCOP  1->75 1t33A1 a.4.1.9 * 3.2e-15 37.3 %
:HMM:PFM   4->49 PF00440 * TetR_N 1.2e-18 52.2 46/47  
:HMM:PFM   28->89 PF01442 * Apolipoprotein 0.00028 16.9 59/202  
:BLT:SWISS 2->154 Y1255_MYCTU 7e-06 30.6 %
:PROS 16->46|PS01081|HTH_TETR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57806.1 GT:GENE BAD57806.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3143938..3144471 GB:FROM 3143938 GB:TO 3144471 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57806.1 LENGTH 177 SQ:AASEQ MDTLLEAAAQMFTRRGLAATTNHIAERAGLSIGTLYQYFPNKEALLHALAARHLAEAQARLMPLLAELRRSAPEFEETVRQVLEAVVDLHRDRPALHALLHRVAPRSPREVAALRAFEDRLVEEFAFHLRRCGRGGEDPVYTARTVVHLVDAHLHRVSTAYRVDVERLTVLVRQLTG GT:EXON 1|1-177:0| BL:SWS:NREP 1 BL:SWS:REP 2->154|Y1255_MYCTU|7e-06|30.6|144/202| PROS 16->46|PS01081|HTH_TETR_1|PDOC00830| SEG 43->61|eallhalaarhlaeaqarl| BL:PDB:NREP 1 BL:PDB:REP 5->42|3bjbF|7e-08|52.6|38/176| RP:PDB:NREP 1 RP:PDB:REP 2->175|3c07A|1e-11|17.1|170/216| HM:PFM:NREP 2 HM:PFM:REP 4->49|PF00440|1.2e-18|52.2|46/47|TetR_N| HM:PFM:REP 28->89|PF01442|0.00028|16.9|59/202|Apolipoprotein| RP:SCP:NREP 2 RP:SCP:REP 2->42|1jt0A1|6e-10|36.6|41/71|a.4.1.9| RP:SCP:REP 72->141|1ba3A|3e-04|14.3|63/540|e.23.1.1| HM:SCP:REP 1->75|1t33A1|3.2e-15|37.3|75/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 16 OP:NHOMOORG 16 OP:PATTERN -------------------------------------------------------------------- --------------1------1---1-------11111--------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------1-----1----------------------------------------------------------------------1---------------------------------------1----------------------------------1-----1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 175 STR:RPRED 98.9 SQ:SECSTR THHHHHHHHHHHHHTccTTccHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHcccHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHTcTTcTTcTTcGGGHHHHHHHHHHHHHHHHTccccccGGGTTHHHHHHHHHHHHHHHHHcccTTcHHHHHH## DISOP:02AL 176-178| PSIPRED cHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcc //