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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57809.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  462/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
f.38.1
:494 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  4->169 1pw4A  f.38.1.1 * 2e-07 9.7 %
:HMM:SCOP  1->479 1pw4A_ f.38.1.1 * 2.8e-66 29.6 %
:HMM:PFM   17->410 PF07690 * MFS_1 3.9e-51 28.2 344/353  
:BLT:SWISS 10->330 YHCA_BACSU 4e-27 30.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57809.1 GT:GENE BAD57809.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3145639..3147123) GB:FROM 3145639 GB:TO 3147123 GB:DIRECTION - GB:PRODUCT putative transporter GB:PROTEIN_ID BAD57809.1 LENGTH 494 SQ:AASEQ MSAPVRPRAPMTVALVLMVGSIMATLDQTIVNVAVNRLSADFDVPLATVQWVTTGYALALGAVVPASAWAMGRFGAKRLYLAAVVAFALGSLLAGLAWNIGSLIAFRVAQGVGGGLLMPVGMTILVRAATPERLGRLMSTLGLAILVGPLAGPVLGGYLIDEVSWRWMFLVNVPVAALVLVLASRVFPADLPEPRRRLDVVGLLLMSPGLALVIYAVTAATERGGFASPAVLTPLLAGAGLVAAFVHRGLTAPEPLLDLRVLRNPVIGAAAALVGLFAAGYFGSMLLQPLYFQLARGETATMAGALGIPFALASGLTMQVAGRLIDRIPPGSYLPVSIGVGVAGFLLFRAQLDADASYWGLCAAMLLMGAGGGGTIMPALTTATRALAPEQQSSGTTTVNMVSTTAMAIGTALASVVLSALLPIDGGLQALHRLDPAARAALAPALAETFHDAYLLAPVLMGLALVPALLLPRRRIDADGVPGERQALASVEPA GT:EXON 1|1-494:0| BL:SWS:NREP 1 BL:SWS:REP 10->330|YHCA_BACSU|4e-27|30.3|320/532| TM:NTM 14 TM:REGION 11->33| TM:REGION 51->73| TM:REGION 79->101| TM:REGION 109->131| TM:REGION 138->160| TM:REGION 168->190| TM:REGION 198->220| TM:REGION 229->250| TM:REGION 267->289| TM:REGION 300->322| TM:REGION 330->351| TM:REGION 359->381| TM:REGION 402->424| TM:REGION 451->472| SEG 81->97|laavvafalgsllagla| SEG 111->122|gvgggllmpvgm| SEG 146->159|lvgplagpvlggyl| SEG 170->183|lvnvpvaalvlvla| SEG 229->244|pavltpllagaglvaa| SEG 268->283|gaaaalvglfaagyfg| SEG 360->374|glcaamllmgagggg| SEG 379->388|alttatrala| SEG 412->422|alasvvlsall| SEG 430->447|alhrldpaaraalapala| SEG 455->475|llapvlmglalvpalllprrr| HM:PFM:NREP 1 HM:PFM:REP 17->410|PF07690|3.9e-51|28.2|344/353|MFS_1| RP:SCP:NREP 1 RP:SCP:REP 4->169|1pw4A|2e-07|9.7|165/434|f.38.1.1| HM:SCP:REP 1->479|1pw4A_|2.8e-66|29.6|398/447|f.38.1.1|1/1|MFS general substrate transporter| OP:NHOMO 1079 OP:NHOMOORG 467 OP:PATTERN ------1----------------1--------------------2----------------------- 41317--11112--13411-12--A21111135222434216462-4-122-122--2--2221221574-----233-2---1-11111-1-1-------1---3-1-1---------------11111-111---1111---21-----------------------1----------------1----41677777575365665451554356611224414233332D23333333333333343346216-56-31-254443312431312------------------------------------------------25---11---1---66---------1--1-12212---12--------1-5112-----122331-12111111211222221-1111133323--411123-3341--1------1111---2222222212222-11-------------------------------2311----1688685654557766544534C7C4346--223-121221323-12-----1-----------1-1-1--1-1--1-----1-12112-111-12--1----------------------11-4421--21------------1111------1--------------11331111111111111-111111111111111111113111---12-111111111111141111111--222222222222-----111-------1-1111-1--22-1----11111-2---2-22222332123221322-------------------11-112111211211-------------------------------------------------------------2- -------------1------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-6, 473-494| PSIPRED cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc //