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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57812.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  341/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
f.38.1
:396 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  99->173 1pw4A  f.38.1.1 * 1e-04 20.0 %
:HMM:SCOP  1->395 1pw4A_ f.38.1.1 * 2.5e-54 28.7 %
:HMM:PFM   27->342 PF07690 * MFS_1 3.7e-30 25.2 314/353  
:HMM:PFM   320->388 PF00083 * Sugar_tr 0.00038 26.1 69/451  
:BLT:SWISS 35->366 NEPI_ECOL5 3e-29 24.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57812.1 GT:GENE BAD57812.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(3148815..3150005) GB:FROM 3148815 GB:TO 3150005 GB:DIRECTION - GB:PRODUCT putative transporter GB:PROTEIN_ID BAD57812.1 LENGTH 396 SQ:AASEQ MTDLRQTPQDTGRPVRGWLGVAAVTGATFTVVTSEMLPVGLLTPMSADLRVSEGVGGLTLTITGLVAAVAAPLLTPALGRVDRKTVWAVLLTVLTVGNLAAALAPGFAVMVAARVLVGIGMGGVWSIAAGTAVRLVPESQAARATTLVFSGVAVASVLGIPAGTYAGALMGWRAAFLAAVAVGVLLLVEAAILLPPLPPVRVTGFVESLGLLRLPALRTGLIAVALLVTGHFAAYTYIRPALEQLTGAGSATVGTVLLLFGIAGVAGNFTAGARAARAPRTTLRVLAAILAAAATLTPLLGTAVPTAAALIAVWGLAYGGVSVTAQNWVFAAAPDHREASSALFVGVFNGAIAAGAFLGGVLADRLGVTASLLIGGAAAAAAALVSATGRARTAQI GT:EXON 1|1-396:0| BL:SWS:NREP 1 BL:SWS:REP 35->366|NEPI_ECOL5|3e-29|24.4|332/396| TM:NTM 11 TM:REGION 21->43| TM:REGION 57->79| TM:REGION 86->108| TM:REGION 114->136| TM:REGION 139->161| TM:REGION 174->196| TM:REGION 208->230| TM:REGION 247->269| TM:REGION 290->312| TM:REGION 340->362| TM:REGION 369->390| SEG 20->33|gvaavtgatftvvt| SEG 54->79|gvggltltitglvaavaaplltpalg| SEG 85->96|tvwavlltvltv| SEG 174->202|aaflaavavgvlllveaaillpplppvrv| SEG 270->310|tagaraaraprttlrvlaailaaaatltpllgtavptaaal| SEG 369->392|taslliggaaaaaaalvsatgrar| HM:PFM:NREP 2 HM:PFM:REP 27->342|PF07690|3.7e-30|25.2|314/353|MFS_1| HM:PFM:REP 320->388|PF00083|0.00038|26.1|69/451|Sugar_tr| RP:SCP:NREP 1 RP:SCP:REP 99->173|1pw4A|1e-04|20.0|75/434|f.38.1.1| HM:SCP:REP 1->395|1pw4A_|2.5e-54|28.7|394/447|f.38.1.1|1/1|MFS general substrate transporter| OP:NHOMO 746 OP:NHOMOORG 344 OP:PATTERN --------------------------------------1----------------------------- -----11111221321111-11--1211111111113433----1111-111243-----------6224--111111------------11-1-------1-1-----1-----------------------------------------------------------------------------------322222212-1211231-1123113--111-211111-73---------------111111-1----1-------------------------------------------------------------------------------------------------------------------4----1--13-31-------------------2-22-111-116--43313226333332----11------11111111111121--1--------------------------------1-2121235686752222266442223236523331--222-12-1211-4122--1-111-----------1-2-------111---11-1---------------1-------------------------1111-----1-11--1-112-----11-1--------------3312-733443333333-333333333343433333155523---3133223222333332732233331-211111111111-----------------3----1----------22222231113132222456244341555----------1--1-----1-1--5622122---2-------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-16, 194-210, 395-396| PSIPRED cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //