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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57813.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  231/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:325 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->200 3hhgG PDBj 4e-08 25.6 %
:RPS:PDB   20->129 1cy8A PDBj 1e-09 5.6 %
:RPS:PDB   107->324 1al3A PDBj 4e-14 17.6 %
:RPS:SCOP  20->69 2esnA1  a.4.5.37 * 3e-08 30.0 %
:RPS:SCOP  108->291 1i69A  c.94.1.1 * 4e-15 25.1 %
:HMM:SCOP  4->92 1ixcA1 a.4.5.37 * 2e-19 40.4 %
:HMM:SCOP  89->302 1uthA_ c.94.1.1 * 1.7e-24 34.4 %
:RPS:PFM   21->64 PF00126 * HTH_1 1e-04 54.5 %
:RPS:PFM   114->291 PF03466 * LysR_substrate 2e-09 38.9 %
:HMM:PFM   90->291 PF03466 * LysR_substrate 5e-31 31.2 199/209  
:HMM:PFM   7->64 PF00126 * HTH_1 3.6e-20 44.8 58/60  
:BLT:SWISS 20->195 ALSR_BACSU 1e-15 29.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57813.1 GT:GENE BAD57813.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3150106..3151083 GB:FROM 3150106 GB:TO 3151083 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57813.1 LENGTH 325 SQ:AASEQ MSGVEPRELEAFLALADELHFGRAAARLYLSQSRVSQLLRALEQRIGGRLVERTSRTVRLTPLGAEFAAQLRPAYAALRSVLEAARAAAGGVDGVLRLGFQGASDEHLMRAVERFATRYPGCRLELTEIPLADPFGALRRGEIDLAVVLLPMGERDLVLGPVFDGQQQMLALPSGHRLAGREAVTAEELAGCPLVGLRGPAPDYWRLAQAPDRTPSGRTIPAGPAVATLEEGLATVAAGTAAMLLCHPTAESHRRRAVSFVPVRGLPVSRLGLVWRREHETARVRAFSETLALVLGHQPPDATDLPAGSRAAAPRVRGIGAPVRA GT:EXON 1|1-325:0| BL:SWS:NREP 1 BL:SWS:REP 20->195|ALSR_BACSU|1e-15|29.7|175/302| SEG 8->19|eleaflaladel| SEG 76->99|aalrsvleaaraaaggvdgvlrlg| BL:PDB:NREP 1 BL:PDB:REP 21->200|3hhgG|4e-08|25.6|176/294| RP:PDB:NREP 2 RP:PDB:REP 20->129|1cy8A|1e-09|5.6|107/563| RP:PDB:REP 107->324|1al3A|4e-14|17.6|216/237| RP:PFM:NREP 2 RP:PFM:REP 21->64|PF00126|1e-04|54.5|44/60|HTH_1| RP:PFM:REP 114->291|PF03466|2e-09|38.9|175/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 90->291|PF03466|5e-31|31.2|199/209|LysR_substrate| HM:PFM:REP 7->64|PF00126|3.6e-20|44.8|58/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 20->69|2esnA1|3e-08|30.0|50/89|a.4.5.37| RP:SCP:REP 108->291|1i69A|4e-15|25.1|175/206|c.94.1.1| HM:SCP:REP 4->92|1ixcA1|2e-19|40.4|89/0|a.4.5.37|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 89->302|1uthA_|1.7e-24|34.4|209/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 337 OP:NHOMOORG 232 OP:PATTERN -------------------------------------------------------------------- --1-6---11----2----------1------1---5453-323-1--------22--------217152------------2---------------------1---1-------------------------------------1--1----------------31-1-------------11------1-111111111111111---111111111-----------11--------------------------------------------------------------------------------------------------------------------------------------------------------1112---1-1--1----------1---1--3-2-----22-----1-1-221----1-----1-1-111111111---1-------------------------------1-2---64242333431111122221111121341412--311--3212-3-11111----------------------------1211-------1----1-111-----------------------------111----1---------------------------1-------11-1-111111111111-111111111111111111-----1---111111111111111111111111------------------------------11---------------------1---2-2113--12--1--1112-------------------------1-1121----------------------------------------------------------------2- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 305 STR:RPRED 93.8 SQ:SECSTR ###################cHHHHHHHTTccHHHHHHHHHHHHHTTcEEEEEcTTccEEEcHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHcHTTTccHTcHHHHHHHHHHcTEEEEEEEEccHHHHHHHHHTTcccEEEEcccccTTccEEEEEEEEEcEEEEEcTTcTTTTTccccHHHHHTcEEEEEcTTcTTHHHHHHHHHHTTHTcccEEEEEEccHHHHHHHHHHTccEEEEEGGGccTTTcTTcEEEEccTTcccEEEEEEETTcccHHHHHHHHHHcTTccHHHHHHHHHcccHHHHHHHHHHcccccc# DISOP:02AL 85-91, 300-325| PSIPRED cccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEcccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEEccccccccEEEEEEccccEEEEEcccccccccccccHHHHccccEEEEccccccHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEEEcccccccEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc //