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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57815.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  12/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:267 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   81->235 2np3B PDBj 8e-11 33.1 %
:RPS:PDB   79->233 3br6A PDBj 2e-16 12.9 %
:RPS:SCOP  77->135 1z77A1  a.4.1.9 * 2e-13 27.1 %
:RPS:SCOP  149->236 1pb6A2  a.121.1.1 * 3e-04 13.6 %
:HMM:SCOP  75->153 1t33A1 a.4.1.9 * 4.2e-15 34.6 %
:HMM:SCOP  147->262 2fq4A2 a.121.1.1 * 6.5e-06 23.0 %
:RPS:PFM   81->124 PF00440 * TetR_N 2e-04 52.3 %
:HMM:PFM   81->125 PF00440 * TetR_N 6.8e-17 44.4 45/47  
:BLT:SWISS 80->235 UIDR_SHIFL 3e-07 27.0 %
:PROS 93->124|PS01081|HTH_TETR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57815.1 GT:GENE BAD57815.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 3152270..3153073 GB:FROM 3152270 GB:TO 3153073 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57815.1 LENGTH 267 SQ:AASEQ MSTQVAGRSGGRLRPVSAHPEDPSSAYPAAVGESARPVSARTRTGEQHSNGENHSTATEFLAAAGTTWADLAALDARSRRIVDAARDCFAEVGFEETTMVRIAELAGVGVATVYRRFGTKSALVRYALMAESQRVGLIMAEAVRRSAGPVSALAEMFAAFVSEARAPRLLTRSLRVSSAAGELTSFLTGDEFIEQGRALVARFLSHWQRRGELGDFDTDVVAELFVRLTMSFISNPRGVLPLDDAAAARQFARRFLAPLLFPHPGGR GT:EXON 1|1-267:0| BL:SWS:NREP 1 BL:SWS:REP 80->235|UIDR_SHIFL|3e-07|27.0|148/196| PROS 93->124|PS01081|HTH_TETR_1|PDOC00830| SEG 61->76|laaagttwadlaalda| SEG 241->262|plddaaaarqfarrflapllfp| BL:PDB:NREP 1 BL:PDB:REP 81->235|2np3B|8e-11|33.1|148/174| RP:PDB:NREP 1 RP:PDB:REP 79->233|3br6A|2e-16|12.9|155/185| RP:PFM:NREP 1 RP:PFM:REP 81->124|PF00440|2e-04|52.3|44/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 81->125|PF00440|6.8e-17|44.4|45/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 77->135|1z77A1|2e-13|27.1|59/75|a.4.1.9| RP:SCP:REP 149->236|1pb6A2|3e-04|13.6|88/126|a.121.1.1| HM:SCP:REP 75->153|1t33A1|4.2e-15|34.6|78/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 147->262|2fq4A2|6.5e-06|23.0|113/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 18 OP:NHOMOORG 12 OP:PATTERN -------------------------------------------------------------------- --------------211--------1-------1115--------------------1--------2-1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 164 STR:RPRED 61.4 SQ:SECSTR ############################################################################cHHHHHHHHHHHHHHHcTTTccHHHHHHHTTccHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHHHHHHccHHH########################### DISOP:02AL 1-12, 14-17, 19-79, 264-267| PSIPRED cccccccccccccccccccccccccccccHHccccHHHHHccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccc //