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Nocardia farcinica IFM 10152 (nfar0)
Gene : aceE
DDBJ      :aceE         putative pyruvate dehydrogenase E1 component
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  431/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
c.36.1c.48.1
:927 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   56->919 2g25A PDBj 0.0 50.0 %
:RPS:PDB   75->558 1d8yA PDBj 9e-60 10.2 %
:RPS:PDB   693->920 2ebfX PDBj 1e-18 10.3 %
:RPS:SCOP  56->473 1l8aA1  c.36.1.10 * 1e-64 57.2 %
:RPS:SCOP  477->731 1l8aA2  c.36.1.6 * 4e-75 45.5 %
:RPS:SCOP  739->919 1l8aA3  c.48.1.1 * 3e-24 37.4 %
:HMM:SCOP  55->477 1l8aA1 c.36.1.10 * 5.4e-126 37.3 %
:HMM:SCOP  477->731 1l8aA2 c.36.1.6 * 1.2e-96 59.6 %
:HMM:SCOP  733->919 1l8aA3 c.48.1.1 * 1.6e-50 41.1 %
:RPS:PFM   104->307 PF00456 * Transketolase_N 2e-25 40.5 %
:HMM:PFM   104->302 PF00456 * Transketolase_N 7.1e-15 28.6 189/333  
:HMM:PFM   364->410 PF00456 * Transketolase_N 1.2e-06 32.6 46/333  
:BLT:SWISS 1->917 ODP1_MYCTU 0.0 79.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56459.1 GT:GENE aceE GT:PRODUCT putative pyruvate dehydrogenase E1 component GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1763201..1765984 GB:FROM 1763201 GB:TO 1765984 GB:DIRECTION + GB:GENE aceE GB:PRODUCT putative pyruvate dehydrogenase E1 component GB:PROTEIN_ID BAD56459.1 LENGTH 927 SQ:AASEQ MASYLPDIDPEETGEWLESFDEMLDREGPQRARYLMLRLLERAGERRVSIPSLTSTDYVNTIPTENEPWFPGDEEVERRYRAWIRWNAAIMVHRAQRPGIGVGGHISTYASSAALYEVGFNHFFRGKDHPGGGDQIFIQGHASPGIYARAFLEGRLTADQLDGFRQEYSHGGLGHGLPSYPHPRLLNNFWEFPTVSMGLGPMNAIYQARFNHYLHDRGIKDTSDQHVWAFLGDGEMDEPESRGLAHVAAMEGLDNLTFVVNCNLQRLDGPVRGNGKIIQELEAFFRGAGWNVIKVIWGREWDALLGADRDGALVNLMNSTPDGDYQTYKANDGAYVRDHFFGRDPRTKALVQNMSDQEIWNLKRGGHDYRKVYAAYAAAMAHKGQPTVILAKTIKGYTLGKHFEGRNATHQMKKLTLQDLKDFRDLQRIPISDAELEKDPYLPPYYHPGMEAREIQYMLDRRRALGGFLPERRAKAKPLQLPGDEAYRSVRKGSGKQNVATTMALVRLMKELLRDKEIGKRIVPIIPDEARTFGMDSWFPSLKIYNRNGQLYTSVDAELMLAYKESTVGQILHEGINEAGSTASFTAAGTSYATHGEPMIPLYIFYSMFGFQRTGDGLWAAADQLARGFVLGATAGRTTLTGEGLQHNDGHSLLLASTNPAVVTYDPAFAFEIAHIVRDGLRRMYGGGRPPAHQAVLPGTEPVERPDTDTFGGEDVFYYITLYNEPYQQPAEPENLDVEGLLKGIYRYRAAGEGELRAQILVSGVTVPDGLRAQALLAEEWGVQADVWSVTSWGELRKEALAKEIAALRDPGADVGTPYITEVLSAAGGPFVAATDWMRAVPDQVRQWVPGEFITLGTDGFGFSDTRPAARRVFNVDAQSIAVAVLEGLARTGKIDRSKAVEAARKYRIGDVDAAPKAAVSSDEDLA GT:EXON 1|1-927:0| BL:SWS:NREP 1 BL:SWS:REP 1->917|ODP1_MYCTU|0.0|79.2|891/901| SEG 373->381|yaayaaama| SEG 579->594|agstasftaagtsyat| SEG 631->645|lgatagrttltgegl| BL:PDB:NREP 1 BL:PDB:REP 56->919|2g25A|0.0|50.0|828/831| RP:PDB:NREP 2 RP:PDB:REP 75->558|1d8yA|9e-60|10.2|470/601| RP:PDB:REP 693->920|2ebfX|1e-18|10.3|203/711| RP:PFM:NREP 1 RP:PFM:REP 104->307|PF00456|2e-25|40.5|195/275|Transketolase_N| HM:PFM:NREP 2 HM:PFM:REP 104->302|PF00456|7.1e-15|28.6|189/333|Transketolase_N| HM:PFM:REP 364->410|PF00456|1.2e-06|32.6|46/333|Transketolase_N| RP:SCP:NREP 3 RP:SCP:REP 56->473|1l8aA1|1e-64|57.2|397/402|c.36.1.10| RP:SCP:REP 477->731|1l8aA2|4e-75|45.5|213/213|c.36.1.6| RP:SCP:REP 739->919|1l8aA3|3e-24|37.4|179/186|c.48.1.1| HM:SCP:REP 55->477|1l8aA1|5.4e-126|37.3|415/415|c.36.1.10|1/1|Thiamin diphosphate-binding fold (THDP-binding)| HM:SCP:REP 477->731|1l8aA2|1.2e-96|59.6|230/230|c.36.1.6|1/1|Thiamin diphosphate-binding fold (THDP-binding)| HM:SCP:REP 733->919|1l8aA3|1.6e-50|41.1|185/186|c.48.1.1|1/1|TK C-terminal domain-like| OP:NHOMO 528 OP:NHOMOORG 436 OP:PATTERN -------------------------------------------------------------------- 1111211111111111111-11112211111211111245-11211211111322111112231121332--------------------1--1---------1--------------------------------11111------------------------------------------11111---------------------------------------------------------------------------------------------------------------------------------------1---1-------1-1-111-111--------1-11-------1---1-1---11111-----11311--1--111----------1---3--2-1-1--------------11-1-11-1--1-11--------2-----1------------------------------1--1--2222222241222222112322221222312321211112122222231121-1111111111111111111-----------------------1111----1--------------------------1111111121111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111123141111113131111111111111111111111112211111111111111--------------------------------------------------------- ------------------------------------------------------------------------------------------------------------1------------------------------------------------------1---------1--------------1-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 915 STR:RPRED 98.7 SQ:SECSTR #####ccccccTTccccGGGcccccTTcccTcccccccccccccccTTcccEEccccTTcccccGGGcccccHcHHHHHHTTTcccccEEEEHHHHHHHHcTTcccccHHHHHHHHHccccccHHHHHcccTTcccGGGccHHHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHTHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccTTTTcTTTTTTTcccccccccccccccHHHHHTTTcHHHHHHHHHHHHHHHHHHTTTTGGGGccTTTcccccEEEcccccccccEEcccGGGcccccHHHHHHHTTccccTTEEEEEEEEETTHHHHHHHHTTccHHHHHHHHHTTccGccHHHHHHHHHHHHHHHTTTTccHHHHHHHTTccTTHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcEEEcTTccEEEcGGGGccccHHHHHHHHHcccHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHcccEEEEEEETTEEEEEEETTTHHHHHHHHHcccccccccEETcccccEETTccEEEccccHHHHHHHHHHHHHHHHHHcTTcEEEEEEEHHHHGGGHHHHHHHHHHTHHcccEEEEEcccGGGcTTcTTcccccHHHHHTcccccEEEccccHHHHHHHHHHHHHccccTcTTcEHHHHTTTccccHHHHHHHHHHHcccEEEEccccEEcccTTccHHHHTTccEEEEcccccHHHHHcEEEEEcTTHHHHHHHHHHHHHHTHTccEEEEEcccHHHHHTccHHHHHHHccTTTccETccEEEEcccTTGGGTccccGGGGGTccEEccccccccEEEccccccccccHHHHHHHHTccHHHHHHHHHHHHHHHTTcccccTTccccccTTccTTHHHHHHH####### DISOP:02AL 1-3, 921-927| PSIPRED cccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHHHHHcccccEEEEEEccccEEccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEEEEcccccccHHcccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccEEcccccccccccHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHcccccEEEEEEEEccccccccccccccHHHHHcccEEEEccccccccEEEEEcHHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccEEEEEccHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccc //