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Nocardia farcinica IFM 10152 (nfar0)
Gene : aftA
DDBJ      :aftA         putative arabinofuranosyltransferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  35/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.3.1
:700 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:SCOP  155->186 1qmyA  d.3.1.2 * 7e-04 9.4 %
:RPS:PFM   59->504 PF12250 * AftA_N 3e-74 51.3 %
:RPS:PFM   526->699 PF12249 * AftA_C 1e-59 67.6 %
:HMM:PFM   36->258 PF12250 * AftA_N 3.9e-98 61.1 221/429  
:HMM:PFM   291->519 PF12250 * AftA_N 6.6e-77 59.0 205/429  
:HMM:PFM   526->697 PF12249 * AftA_C 3.9e-83 70.9 172/178  
:BLT:SWISS 59->695 AFTA_MYCLE e-131 51.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55037.1 GT:GENE aftA GT:PRODUCT putative arabinofuranosyltransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(203132..205234) GB:FROM 203132 GB:TO 205234 GB:DIRECTION - GB:GENE aftA GB:PRODUCT putative arabinofuranosyltransferase GB:PROTEIN_ID BAD55037.1 LENGTH 700 SQ:AASEQ MPEGNADQEPEVGAPMTTSDRGRLRPLVRQVGGGVGEAIAAALVAVVVAAVGLVAFSLVEWPAFNSSHVTRALTTVGQVVAAALLVAAIVLVRRRRAPRLAALLSWAGIAAFVTVTLGMPLAATKLYLFGVSVDQEFRTEYLTRLTDSPALRDMTYADIPPFYPAGWFWVGGRVADVLGMSGWEAFKPYAIGSLAVAAVLALVLWTRLIRTDWAIAVTAASTAVALAFASPEAYSAVIVLLLPPALVLAWGALHRPVSDGLVADDSAVAEPPATTAERAAVPEQAGSAVPASAGGWGAVVGTGLFLGLAATFYTLYLGVAAFAVTLMGLLAAFLAVRAAKQTRRPRRGTAVVATGPVWRAALPPLVRLLVIAVIAALIAAVVWTPVLVEMLRSTTPRSGTALHYLPRAGAELPLPMLEFSLLGALCLIGTIWLVVRASSSRRAQALGVGVLAIYLWTLLSMLVTAAGTTLLSFRLEAPLLALLATAGAFGFVEGARAAYQAFNEPERFRVAVAVVAVLGALAFAQDIPHVLAPEITTAYTDTDGDGERADKRPPGAASYYREIDAALREQTGRPRDETVVLTADTTFLAFYPYFGFQALTSHYANPLADFAGRAALIRQWSELDSPAALRAALAESPWRAPDAFLFRRSGETYTLRLAEDVYPNDPNVRRYTVSFPAALFDDPAFTSTDIGPFTLVTVRD GT:EXON 1|1-700:0| BL:SWS:NREP 1 BL:SWS:REP 59->695|AFTA_MYCLE|e-131|51.6|589/632| TM:NTM 13 TM:REGION 36->58| TM:REGION 71->92| TM:REGION 106->128| TM:REGION 179->201| TM:REGION 210->231| TM:REGION 233->255| TM:REGION 294->316| TM:REGION 320->342| TM:REGION 367->389| TM:REGION 417->439| TM:REGION 447->469| TM:REGION 478->500| TM:REGION 509->531| SEG 31->55|vgggvgeaiaaalvavvvaavglva| SEG 79->104|vvaaallvaaivlvrrrraprlaall| SEG 194->204|lavaavlalvl| SEG 214->230|aiavtaastavalafas| SEG 239->249|vlllppalvla| SEG 267->283|avaeppattaeraavpe| SEG 359->382|raalpplvrllviaviaaliaavv| SEG 470->488|llsfrleapllallataga| SEG 510->522|vavavvavlgala| RP:PFM:NREP 2 RP:PFM:REP 59->504|PF12250|3e-74|51.3|386/429|AftA_N| RP:PFM:REP 526->699|PF12249|1e-59|67.6|173/178|AftA_C| HM:PFM:NREP 3 HM:PFM:REP 36->258|PF12250|3.9e-98|61.1|221/429|AftA_N| HM:PFM:REP 291->519|PF12250|6.6e-77|59.0|205/429|AftA_N| HM:PFM:REP 526->697|PF12249|3.9e-83|70.9|172/178|AftA_C| RP:SCP:NREP 1 RP:SCP:REP 155->186|1qmyA|7e-04|9.4|32/156|d.3.1.2| OP:NHOMO 35 OP:NHOMOORG 35 OP:PATTERN -------------------------------------------------------------------- -----11111111111111-11111111111111111111--------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 109 STR:RPRED 15.6 SQ:SECSTR ###############################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################Tcccccccccccccccc##cccHHHHHHHH#HHHTcHHHHHHHGGGHHHHHHHcccccccccGGGcEEEETTTTc#EEEEEccccT#######TcEEEEEEcccccccTTccccTTcEEE##### DISOP:02AL 1-15, 282-292| PSIPRED cccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEcHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHcccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHcHHHHHHHccHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccEEEEEcccccEEEEEEcccccccccEEEEEEEEcHHHHccccEEEEEcccEEEEEEcc //