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Nocardia farcinica IFM 10152 (nfar0)
Gene : aftB
DDBJ      :aftB         putative terminal arabinosyltransferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  33/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:647 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   245->274 PF06725 * 3D 6e-04 43.3 %
:HMM:PFM   365->382 PF11052 * Tr-sialidase_C 0.00073 47.1 17/40  
:BLT:SWISS 548->614 SYD_BARBK 8e-04 34.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55022.1 GT:GENE aftB GT:PRODUCT putative terminal arabinosyltransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 173218..175161 GB:FROM 173218 GB:TO 175161 GB:DIRECTION + GB:GENE aftB GB:PRODUCT putative terminal arabinosyltransferase GB:PROTEIN_ID BAD55022.1 LENGTH 647 SQ:AASEQ MVDTAERTEDEADRPAERARSASSSLRLSSATFVGGIVLTVVLFAIGAWQRRWIADDGLIVLRTVRNLLAGNGPVFNMDERVETNTSAAWTYIVWFFSWLTQMRLEYVVLAVALTLSLIAMVFAMLGAARLWGGPRTALLLPAGVLVYIAVPPARDYATSGLESGLVICWLAVLWWSLMRWARAERVRPGALAGLVFLAGLAPLIRPEMTLVGGLALVMIFFAPMPQWRLGPVATRALIVAVAGLVPLGYQIWRMGYYGLPYPNTAVAKDAGGAKWSQGFTYLWDLVGPYLLWLPLLILLAAAIVAVRGGGLPAWSPAGDGSEAPGGAGESRLLRVRRWLRSPAAVVALVLVSGLLLTVYALRVGGDFMHGRMLLPQLFLLLLPVAVLPVRLPVPRSVAGQRTLAAVLLAWAGAMGWALFAADTTAIKTGTKISESGIVDERVYYVLNTGHDHPIRAEDYLDYPRMRAMVNNIAENPNGGLLLNSPSFMFWYVAPPPQPIPPGGAGHTVFFLNLGMTSMNVPLEVRVIDQMGLAYPLAAHTDRLENGRIGHDKNLYPDWVIVDAGMVDRKPWMPWYLDEKWVTQARVAMSCPQTQALLISSRDPLTFERFRHNLRNALDFAKYRIDRVPKYEIQRCGLVDPFPQPPR GT:EXON 1|1-647:0| BL:SWS:NREP 1 BL:SWS:REP 548->614|SYD_BARBK|8e-04|34.8|66/100| TM:NTM 10 TM:REGION 28->50| TM:REGION 105->127| TM:REGION 159->181| TM:REGION 188->206| TM:REGION 212->231| TM:REGION 233->255| TM:REGION 288->309| TM:REGION 341->363| TM:REGION 372->394| TM:REGION 403->425| SEG 5->32|aertedeadrpaerarsassslrlssat| SEG 190->202|galaglvflagla| SEG 286->312|lvgpyllwlpllillaaaivavrgggl| SEG 332->341|rllrvrrwlr| SEG 344->359|aavvalvlvsgllltv| SEG 374->395|llpqlfllllpvavlpvrlpvp| SEG 404->422|laavllawagamgwalfaa| SEG 495->502|pppqpipp| RP:PFM:NREP 1 RP:PFM:REP 245->274|PF06725|6e-04|43.3|30/70|3D| HM:PFM:NREP 1 HM:PFM:REP 365->382|PF11052|0.00073|47.1|17/40|Tr-sialidase_C| GO:PFM:NREP 3 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF06725|IPR010611| GO:PFM GO:0009254|"GO:peptidoglycan turnover"|PF06725|IPR010611| GO:PFM GO:0019867|"GO:outer membrane"|PF06725|IPR010611| OP:NHOMO 33 OP:NHOMOORG 33 OP:PATTERN -------------------------------------------------------------------- ----1111111-1-11111-11111111111111111111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-27, 501-502, 644-647| PSIPRED ccccccccccHHccHHHHHHHHHHHcEEcHHHHHHHHHHHHHHHHHHHHHHEEEccccEEHHHHHHHHHHcccccccccccEEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHEEEEEcccccEEEccHHHHHHHHHHHHHHHHHEEccccccEEcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHccHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHcccHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHccccccEEEccccccEEEEEcccccccccccccEEEEEEccHHHcccccEEEEEEcccccccHHHcccHHccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccc //