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Nocardia farcinica IFM 10152 (nfar0)
Gene : alr
DDBJ      :alr          putative alanine racemase
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  823/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
b.49.2c.1.6
:381 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   12->376 1xfcA PDBj 8e-92 53.1 %
:RPS:PDB   13->381 1bd0A PDBj 6e-48 35.6 %
:RPS:SCOP  15->250 1rcqA2  c.1.6.1 * 2e-27 33.2 %
:RPS:SCOP  245->378 1rcqA1  b.49.2.2 * 2e-32 28.7 %
:HMM:SCOP  15->250 1rcqA2 c.1.6.1 * 1.2e-63 45.3 %
:HMM:SCOP  233->377 1bd0A1 b.49.2.2 * 3.7e-49 47.4 %
:RPS:PFM   15->179 PF01168 * Ala_racemase_N 7e-13 34.8 %
:RPS:PFM   250->377 PF00842 * Ala_racemase_C 4e-15 42.1 %
:HMM:PFM   15->237 PF01168 * Ala_racemase_N 2.4e-57 40.8 211/214  
:HMM:PFM   249->377 PF00842 * Ala_racemase_C 3.3e-42 42.6 129/129  
:BLT:SWISS 12->376 ALR_MYCUA 2e-96 54.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55724.1 GT:GENE alr GT:PRODUCT putative alanine racemase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 980992..982137 GB:FROM 980992 GB:TO 982137 GB:DIRECTION + GB:GENE alr GB:PRODUCT putative alanine racemase GB:PROTEIN_ID BAD55724.1 LENGTH 381 SQ:AASEQ MAGSGDVSAQVEAVVDLDAIAHNVRVLREYAGDAAMMVVVKADGYNHGAVEVARTALAAGARELGVTTVAEALRLREAGITAPVLCWLNTLSADYAAAVAADIEIGVSGTEQLRAVATAARATGRTATVTLKVDTGLNRNGIAADELPTVLDLLGELVEEKTVRLRAMFSHLAHADEPKHPFLDEQRDRFTAAAAAATARGLRPELLHLANSAATVTRPDLAFDMVRPGIAVYGLSPVPELGDFGLRPAMTFQAQVALVKRVAEGEGVSYGHQWIAPRDTTVALIPAGYADGVFRPLSGRFDVWLGGTRRPNVGRVCMDQFVVDLGDDAAGVAAGDTAVLFGGGPGVPGAQEWADLLGTIHYEVVCSPRGRAVRRYVGTGR GT:EXON 1|1-381:0| BL:SWS:NREP 1 BL:SWS:REP 12->376|ALR_MYCUA|2e-96|54.2|365/388| SEG 93->102|adyaaavaad| SEG 114->130|ravataaratgrtatvt| SEG 191->199|taaaaaata| SEG 322->340|vvdlgddaagvaagdtavl| BL:PDB:NREP 1 BL:PDB:REP 12->376|1xfcA|8e-92|53.1|360/366| RP:PDB:NREP 1 RP:PDB:REP 13->381|1bd0A|6e-48|35.6|360/381| RP:PFM:NREP 2 RP:PFM:REP 15->179|PF01168|7e-13|34.8|155/211|Ala_racemase_N| RP:PFM:REP 250->377|PF00842|4e-15|42.1|126/127|Ala_racemase_C| HM:PFM:NREP 2 HM:PFM:REP 15->237|PF01168|2.4e-57|40.8|211/214|Ala_racemase_N| HM:PFM:REP 249->377|PF00842|3.3e-42|42.6|129/129|Ala_racemase_C| GO:PFM:NREP 2 GO:PFM GO:0006522|"GO:alanine metabolic process"|PF00842|IPR011079| GO:PFM GO:0008784|"GO:alanine racemase activity"|PF00842|IPR011079| RP:SCP:NREP 2 RP:SCP:REP 15->250|1rcqA2|2e-27|33.2|223/226|c.1.6.1| RP:SCP:REP 245->378|1rcqA1|2e-32|28.7|129/131|b.49.2.2| HM:SCP:REP 15->250|1rcqA2|1.2e-63|45.3|223/0|c.1.6.1|1/1|PLP-binding barrel| HM:SCP:REP 233->377|1bd0A1|3.7e-49|47.4|135/149|b.49.2.2|1/1|Alanine racemase C-terminal domain-like| OP:NHOMO 1062 OP:NHOMOORG 833 OP:PATTERN --------------------------------------11111------------------------- 1111111111111111111-11111111111111111111111111111223212112--112111111111111111111111111111111111---11111111111--------------11111111111111111---111111111111111111111111111111111111111111111111122222222222222221122222231111222111111322111111111111112112211111111111111111111232111111111111111111111111111111111111111111111111112233322331211211111111111111212211121112112111211-1111111111-1111111112111111111111-11111112231122222222221111121111111111111111111-2231111------------111111-11-111-----11211122212222222111122112222122321211111111--111111111111111211111111111111111111111121111111111111111111111111111111-1111111111111111332111111121111111111111111111--11111------22111212222222222-22222222222222222232221122322332232222323322111222211222122212222--111111111111-111111111111111111222321211111222211112222111111111111111122322222131111111111111111111111111111111111111--------------------------11111-----112 -------------------------------------------------------------------------------------------------------------1-----------------------------------------------------31----------------------------11---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 376 STR:RPRED 98.7 SQ:SECSTR #####cccccEEEEEEHHHHHHHHHHHHHHccTcEEEEEcHHHHHTTcHHHHHHHHHHHTccEEEEccHHHHHHHHHTTccccEEEcccccGGGHHHHHHTTEEEEEccHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHcTTEEEEEEEcccccTTccccHHHHHHHHHHHHHHHHHTTccccccEEEcccHHHHHHcTTccTTEEEEcGGGGTcccGGGGccccccccEEEEEEccEEEEEcTTcEEcGGGcEEccccEEEEEEcccGGGTccGGGGGccEEEETTEEEEEEcccccccEEEEccccccTTcEEEEEEEEETTEEEccHHHHHHHHTccTTHHHHHccTTccEEEEETTE DISOP:02AL 1-7, 380-381| PSIPRED ccccccccccEEEEEEHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHccccEEEEEcHHHHHHHHHccccccEEEEccccHHHHHHHHHcccEEEEccHHHHHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHcccEEEEEEEEEccccccccccccccEEEEEEEEEEEEEEEcccccEEcccEEEEccccEEEEEEEEcccccccccccccEEEEccEEEEEEccccccEEEEEEcccccccccccEEEEEccccccccHHHHHHHHccccEEEHccccccccEEEEEccc //