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Nocardia farcinica IFM 10152 (nfar0)
Gene : atpC
DDBJ      :atpC         putative ATP synthase epsilon subunit
Swiss-Prot:ATPE_NOCFA   RecName: Full=ATP synthase epsilon chain;AltName: Full=ATP synthase F1 sector epsilon subunit;AltName: Full=F-ATPase epsilon subunit;

Homologs  Archaea  0/68 : Bacteria  204/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.93.1
:130 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->105 2qe7H PDBj 2e-14 41.1 %
:RPS:PDB   7->125 2e5yA PDBj 2e-20 31.6 %
:RPS:SCOP  9->92 1aqtA2  b.93.1.1 * 4e-18 32.5 %
:HMM:SCOP  7->92 1aqtA2 b.93.1.1 * 5.7e-19 45.9 %
:RPS:PFM   9->89 PF02823 * ATP-synt_DE_N 2e-08 37.5 %
:HMM:PFM   9->89 PF02823 * ATP-synt_DE_N 2.5e-25 41.2 80/80  
:HMM:PFM   89->110 PF04259 * SASP_gamma 0.00054 45.5 22/84  
:BLT:SWISS 1->130 ATPE_NOCFA 4e-68 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55911.1 GT:GENE atpC GT:PRODUCT putative ATP synthase epsilon subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1176104..1176496 GB:FROM 1176104 GB:TO 1176496 GB:DIRECTION + GB:GENE atpC GB:PRODUCT putative ATP synthase epsilon subunit GB:PROTEIN_ID BAD55911.1 LENGTH 130 SQ:AASEQ MAAESTKDMSVDLVAVERRLWSGQATFVSAQTTEGQIGIMPGHEPLLGQLVEGGIVNIVPVEGERIVAAVHGGFFSVTAGTVRILAESAEFAGEVDVDEARKVLADSAASDEELRVAQGRVRAVEQVASA GT:EXON 1|1-130:0| SW:ID ATPE_NOCFA SW:DE RecName: Full=ATP synthase epsilon chain;AltName: Full=ATP synthase F1 sector epsilon subunit;AltName: Full=F-ATPase epsilon subunit; SW:GN Name=atpC; OrderedLocusNames=NFA_10660; SW:KW ATP synthesis; Cell membrane; CF(1); Complete proteome;Hydrogen ion transport; Ion transport; Membrane; Transport. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->130|ATPE_NOCFA|4e-68|100.0|130/130| GO:SWS:NREP 7 GO:SWS GO:0006754|"GO:ATP biosynthetic process"|ATP synthesis| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0045261|"GO:proton-transporting ATP synthase complex, catalytic core F(1)"|CF(1)| GO:SWS GO:0015992|"GO:proton transport"|Hydrogen ion transport| GO:SWS GO:0006811|"GO:ion transport"|Ion transport| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0006810|"GO:transport"|Transport| BL:PDB:NREP 1 BL:PDB:REP 9->105|2qe7H|2e-14|41.1|95/135| RP:PDB:NREP 1 RP:PDB:REP 7->125|2e5yA|2e-20|31.6|117/133| RP:PFM:NREP 1 RP:PFM:REP 9->89|PF02823|2e-08|37.5|80/80|ATP-synt_DE_N| HM:PFM:NREP 2 HM:PFM:REP 9->89|PF02823|2.5e-25|41.2|80/80|ATP-synt_DE_N| HM:PFM:REP 89->110|PF04259|0.00054|45.5|22/84|SASP_gamma| GO:PFM:NREP 4 GO:PFM GO:0015986|"GO:ATP synthesis coupled proton transport"|PF02823|IPR020546| GO:PFM GO:0045261|"GO:proton-transporting ATP synthase complex, catalytic core F(1)"|PF02823|IPR020546| GO:PFM GO:0046933|"GO:hydrogen ion transporting ATP synthase activity, rotational mechanism"|PF02823|IPR020546| GO:PFM GO:0046961|"GO:proton-transporting ATPase activity, rotational mechanism"|PF02823|IPR020546| RP:SCP:NREP 1 RP:SCP:REP 9->92|1aqtA2|4e-18|32.5|83/85|b.93.1.1| HM:SCP:REP 7->92|1aqtA2|5.7e-19|45.9|85/85|b.93.1.1|1/1|Epsilon subunit of F1F0-ATP synthase N-terminal domain| OP:NHOMO 208 OP:NHOMOORG 204 OP:PATTERN -------------------------------------------------------------------- ----111111111111111-111111111111111111111--11--1-111-11111--11111111111----111------------------------------------------------------------------1-1-----------------------1---------------------------------------1----------1--111111111-----------------------------------------------------------------------------------------------------------------1-----1---------------------------------------------1111111111---------------------------1--1----------------------1--------------------------------------111111211211111111111111111111-1---111------------1-1-1-111111111---11------------11-----------1111--------------------------1--22----11-11-111111------1----11------------------1-1-----------------------------------11--1----------------------1-111111111111--------------1--1----1--1111---1------111-1---------1----1----------------1--------11111-1-----1111-----------------------------------------------1----------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 124 STR:RPRED 95.4 SQ:SECSTR ######ccEEEEEEETTEEEEEEEEcEEEEEETTEEEEEcTTcccEEEEEcEEEEEEEEcETTEEEEEEEEEEEEEEETTEEEEEEccEEEGGGccHHHHccccccHHHHHHHHHHHHHHHHHHTGHHTT DISOP:02AL 1-5, 106-119| PSIPRED cccccccEEEEEEEccccEEEEccEEEEEEEccccEEEEccccccEEEEEcccEEEEEEEccccEEEEEEEccEEEEEccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //