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Nocardia farcinica IFM 10152 (nfar0)
Gene : atpD
DDBJ      :atpD         putative ATP synthase beta subunit
Swiss-Prot:ATPB_NOCFA   RecName: Full=ATP synthase subunit beta;         EC=3.6.3.14;AltName: Full=F-ATPase subunit beta;AltName: Full=ATP synthase F1 sector subunit beta;

Homologs  Archaea  68/68 : Bacteria  907/915 : Eukaryota  196/199 : Viruses  0/175   --->[See Alignment]
a.69.1b.49.1c.37.1
:482 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   31->477 1skyE PDBj e-155 65.8 %
:RPS:PDB   31->480 2ck3F PDBj e-123 58.2 %
:RPS:SCOP  31->93 1bmfD2  b.49.1.1 * 4e-12 53.4 %
:RPS:SCOP  94->363 1bmfD3  c.37.1.11 * 6e-82 61.9 %
:RPS:SCOP  364->480 1bmfD1  a.69.1.1 * 4e-27 54.7 %
:HMM:SCOP  8->93 1mabB2 b.49.1.1 * 1.4e-26 54.3 %
:HMM:SCOP  94->368 1e79A3 c.37.1.11 * 2.9e-92 43.4 %
:HMM:SCOP  367->474 1fx0B1 a.69.1.1 * 2.3e-44 62.0 %
:RPS:PFM   31->91 PF02874 * ATP-synt_ab_N 5e-10 50.0 %
:RPS:PFM   147->361 PF00006 * ATP-synt_ab 4e-35 39.8 %
:RPS:PFM   376->479 PF00306 * ATP-synt_ab_C 1e-22 50.0 %
:HMM:PFM   147->361 PF00006 * ATP-synt_ab 2.9e-65 33.2 211/215  
:HMM:PFM   376->475 PF00306 * ATP-synt_ab_C 5.3e-27 39.2 97/113  
:HMM:PFM   20->91 PF02874 * ATP-synt_ab_N 1.5e-25 53.6 69/69  
:BLT:SWISS 1->482 ATPB_NOCFA 0.0 100.0 %
:PROS 352->361|PS00152|ATPASE_ALPHA_BETA
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55910.1 GT:GENE atpD GT:PRODUCT putative ATP synthase beta subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1174649..1176097 GB:FROM 1174649 GB:TO 1176097 GB:DIRECTION + GB:GENE atpD GB:PRODUCT putative ATP synthase beta subunit GB:PROTEIN_ID BAD55910.1 LENGTH 482 SQ:AASEQ MTAAVTQDNTSRTGAAAGRVVRVIGPVVDVEFPRGAIPELFNALHADITLTSVAKTLTLEVAQHLGDNIVRTISMQPTDGLVRGATVTDTGKPISVPVGDVVKGHVFNALGDCLDTPGLGRDGEQWGIHRKPPSFDQLEGKTELLETGIKVIDLLTPYVKGGKIGLFGGAGVGKTVLIQEMITRIAREFSGTSVFAGVGERTREGTDLHLEMEEMGVLQDTALVFGQMDEPPGTRMRVALSALTMAEYFRDVQHQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGELQERITSTRGRSITSLQAIYVPADDYTDPAPATTFAHLDATTELSRPISQKGIYPAVDPLTSTSRILEASIVGDRHFAVANEVKRILQKYKELQDIIAILGMDELSEEDKVLVGRARRLEKFLGQNFIVAEKFTGQPGSVVPLEQTIDDFDRVCKGEFDHYPEQAFNSCGGLDDVEKAAKKIAGK GT:EXON 1|1-482:0| SW:ID ATPB_NOCFA SW:DE RecName: Full=ATP synthase subunit beta; EC=3.6.3.14;AltName: Full=F-ATPase subunit beta;AltName: Full=ATP synthase F1 sector subunit beta; SW:GN Name=atpD; OrderedLocusNames=NFA_10650; SW:KW ATP synthesis; ATP-binding; Cell membrane; CF(1); Complete proteome;Hydrogen ion transport; Hydrolase; Ion transport; Membrane;Nucleotide-binding; Transport. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->482|ATPB_NOCFA|0.0|100.0|482/482| GO:SWS:NREP 10 GO:SWS GO:0006754|"GO:ATP biosynthetic process"|ATP synthesis| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0045261|"GO:proton-transporting ATP synthase complex, catalytic core F(1)"|CF(1)| GO:SWS GO:0015992|"GO:proton transport"|Hydrogen ion transport| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0006811|"GO:ion transport"|Ion transport| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 352->361|PS00152|ATPASE_ALPHA_BETA|PDOC00137| SEG 12->30|rtgaaagrvvrvigpvvdv| SEG 160->174|kggkiglfggagvgk| BL:PDB:NREP 1 BL:PDB:REP 31->477|1skyE|e-155|65.8|447/470| RP:PDB:NREP 1 RP:PDB:REP 31->480|2ck3F|e-123|58.2|445/466| RP:PFM:NREP 3 RP:PFM:REP 31->91|PF02874|5e-10|50.0|58/68|ATP-synt_ab_N| RP:PFM:REP 147->361|PF00006|4e-35|39.8|211/212|ATP-synt_ab| RP:PFM:REP 376->479|PF00306|1e-22|50.0|104/106|ATP-synt_ab_C| HM:PFM:NREP 3 HM:PFM:REP 147->361|PF00006|2.9e-65|33.2|211/215|ATP-synt_ab| HM:PFM:REP 376->475|PF00306|5.3e-27|39.2|97/113|ATP-synt_ab_C| HM:PFM:REP 20->91|PF02874|1.5e-25|53.6|69/69|ATP-synt_ab_N| GO:PFM:NREP 9 GO:PFM GO:0015992|"GO:proton transport"|PF02874|IPR004100| GO:PFM GO:0016469|"GO:proton-transporting two-sector ATPase complex"|PF02874|IPR004100| GO:PFM GO:0046034|"GO:ATP metabolic process"|PF02874|IPR004100| GO:PFM GO:0046933|"GO:hydrogen ion transporting ATP synthase activity, rotational mechanism"|PF02874|IPR004100| GO:PFM GO:0046961|"GO:proton-transporting ATPase activity, rotational mechanism"|PF02874|IPR004100| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| GO:PFM GO:0015986|"GO:ATP synthesis coupled proton transport"|PF00306|IPR000793| GO:PFM GO:0016820|"GO:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"|PF00306|IPR000793| GO:PFM GO:0033178|"GO:proton-transporting two-sector ATPase complex, catalytic domain"|PF00306|IPR000793| RP:SCP:NREP 3 RP:SCP:REP 31->93|1bmfD2|4e-12|53.4|58/73|b.49.1.1| RP:SCP:REP 94->363|1bmfD3|6e-82|61.9|270/276|c.37.1.11| RP:SCP:REP 364->480|1bmfD1|4e-27|54.7|117/118|a.69.1.1| HM:SCP:REP 8->93|1mabB2|1.4e-26|54.3|81/0|b.49.1.1|1/1|N-terminal domain of alpha and beta subunits of F1 ATP synthase| HM:SCP:REP 94->368|1e79A3|2.9e-92|43.4|274/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 367->474|1fx0B1|2.3e-44|62.0|108/108|a.69.1.1|1/1|C-terminal domain of alpha and beta subunits of F1 ATP synthase| OP:NHOMO 3905 OP:NHOMOORG 1171 OP:PATTERN 22222222222222222222222222222222222222222222222622442222222222222222 3333222222222222222-22222222222222222222322232223223232222222232322222222222222222233733444423222222222222223244444444334444443222224224222222222344224422222222222422222222222222222222222244233333333333333333333333333333333335555553422222222222222222222422222222222222222222222222222222422421444242424444444444444422222222223333555555555535335444755443553333333353333332544335333332222535353333433433333333333-4444434344334333445333333233353364653332222222223342343222222222222222122222222222222223333444354446546564446577783834743332233433433342543334433363222222235523333523453335444433333357756553262333323333333333333333353222352333235352534355433342344443221533333133343343353553333233-543344333353523322322244543555555555555555532334334635666665565652241222223555427352221222222212212222222222434434333353333345422222222233336333337653333444444452222223533333321112111356----2-34332423235322643333233353353432 3444334-G6514444434444444454444244443444434334334434423442444444444424434444434434444444-464444444444449C8236385977843134372853827c6-5753323613683522243264B55758B55446B55B57446444m333339ADD3954463334 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 452 STR:RPRED 93.8 SQ:SECSTR ##############################EEccccccTTcEEEEccEEETTcccccEEEEEEEEETTEEEEEEccccTTccTTcEEEEcccccEEEEcGGGTTcEEcTTcccccccccccccEEEEcccccccGGGccccccEEccccHHHHHHccEETTcEEEEEEcTTccHHHHHHHHHHHTTTTcccEEEEEEEcccHHHHHHHHHHHHHHTccccEEEEEEcTTccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcTHHHHHHHHHHHHHHTccccGGGccTTHHHHHHHHHTTccccTTccEEEEEEEEcGGGcTTcHHHHHHGGGccEEEEccHHHHHTTccccccTTccEETTccHHHHcHHHHHHHHHHHHHHHHHHTTHHHHHHHcGGGccHHHHHHHHHHHHHHHHTccccGGGHHHHccccccccHHHHHHHHHHHHTTTTTTccGGGGTTcccHHHHHHHHHHHcHH DISOP:02AL 480-482| PSIPRED ccccEEEEccccccccccEEEEEEccEEEEEcccccccHHHHHEEccccccccccEEEEEEEEEEcccEEEEEEEccccccccccEEEEcccEEEEEcccccEEEEEEccccEEccccccccccEEEcccccccccccccccccHHccHHHHHHHccccccccEEEEccccccHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccEEEEEEEEEEccccccHHHHHHHHHccEEEEEEHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHccccccccHHHHHHHHHHHHccccccccHHHHHccccHHHHHHHHHHHHcc //