[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : bioA
DDBJ      :bioA         putative adenosylmethionine-8-amino-7- oxononanoate aminotransferase
Swiss-Prot:             

Homologs  Archaea  55/68 : Bacteria  733/915 : Eukaryota  179/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:427 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->405 3bv0B PDBj e-123 57.2 %
:RPS:PDB   7->405 3drdB PDBj 3e-74 29.9 %
:RPS:SCOP  14->376 1d7rA  c.67.1.4 * 4e-54 25.5 %
:HMM:SCOP  4->421 1qj5A_ c.67.1.4 * 7.8e-128 38.4 %
:RPS:PFM   31->313 PF00202 * Aminotran_3 5e-42 39.6 %
:HMM:PFM   32->370 PF00202 * Aminotran_3 3.1e-105 39.5 332/339  
:BLT:SWISS 3->403 BIOA_MYCLE e-128 58.9 %
:PROS 242->279|PS00600|AA_TRANSFER_CLASS_3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56664.1 GT:GENE bioA GT:PRODUCT putative adenosylmethionine-8-amino-7- oxononanoate aminotransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1984692..1985975 GB:FROM 1984692 GB:TO 1985975 GB:DIRECTION + GB:GENE bioA GB:PRODUCT putative adenosylmethionine-8-amino-7- oxononanoate aminotransferase GB:PROTEIN_ID BAD56664.1 LENGTH 427 SQ:AASEQ MALTPDQITAIDAAHVWHPYGGFPATTEPLVVASASGVRLTLADGRELVDGMSSWWAAVHGYRHPVLDAALVAQSQRMSHVMFGGLTHEPAARLTELLVQLTPEGLDKVFLCDSGSVSVEVAVKMCLQYWRSLGKPGKRRLLTWRGGYHGDTFTPMSVCDPEGGMHALWTDVLAEQVFVGMPPAEYRPGYVAELEAALAAHADELAAVVVEPVVQGAGGMRFHDPRYLADLRRLCDAHDVLLVFDEIATGFGRTGELFAAEHAGVRPDVMCVGKALTGGYLTLAAALCTTRIAETISAAHGGLMHGPTFMGNPLACAVAVASVELLLARDWRGEVRGIEDGLRAGLAPVRDLPGVVDVRVLGAIGVVELDRPVDMRAATAAAVAAGVWLRPFRNLVYTMPPFISTAADVAAITRGIAAAVAAGDVPS GT:EXON 1|1-427:0| BL:SWS:NREP 1 BL:SWS:REP 3->403|BIOA_MYCLE|e-128|58.9|401/436| PROS 242->279|PS00600|AA_TRANSFER_CLASS_3|PDOC00519| SEG 191->211|vaeleaalaahadelaavvve| SEG 275->290|altggyltlaaalctt| SEG 314->328|lacavavasvellla| SEG 377->385|aataaavaa| SEG 406->424|aadvaaitrgiaaavaagd| BL:PDB:NREP 1 BL:PDB:REP 3->405|3bv0B|e-123|57.2|388/414| RP:PDB:NREP 1 RP:PDB:REP 7->405|3drdB|3e-74|29.9|378/417| RP:PFM:NREP 1 RP:PFM:REP 31->313|PF00202|5e-42|39.6|265/336|Aminotran_3| HM:PFM:NREP 1 HM:PFM:REP 32->370|PF00202|3.1e-105|39.5|332/339|Aminotran_3| GO:PFM:NREP 2 GO:PFM GO:0008483|"GO:transaminase activity"|PF00202|IPR005814| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00202|IPR005814| RP:SCP:NREP 1 RP:SCP:REP 14->376|1d7rA|4e-54|25.5|349/431|c.67.1.4| HM:SCP:REP 4->421|1qj5A_|7.8e-128|38.4|417/429|c.67.1.4|1/1|PLP-dependent transferases| OP:NHOMO 3291 OP:NHOMOORG 967 OP:PATTERN 111--12-1111112-121-11-11--21-3-11112222222-11111122212121112-115-22 2513421333311143344-4822574444458555338B52342112-1114132-2--936253A7644-111-------32222322111211---32334243312-------1-11111-122112111-25554411145-12211212111111211133422-11211111111121433---436555554445545444544434458322241--11-1-6513333333333333323313--------------------1------------11-------------------------1--111----13132----------31222---1-2--412321131323112222111-4224554111-1639584434445366656565666-456437365F62977888C88B9956322379555567744444444455234572222222211---------------11111134329AA98EGGEEE9BBB9CCABDDDD6BCDC565512556475226475795522222542222222222363-24431421321112222322443111132442--1122222111111111111111225532538231364443353333444344441--234221-22266672656665655566-66666556666566666659A95655255554555555555556542555521334444344444--1211111111132585222111211111--266665442325377777B895CAA969AC211111111333222333345443444444533322221122221111-------------------------------------21--11111112 1----11-1---2232633545464843322222324333233333333598A7342-122321312221111233113443322433-32464423232153433-21221111--1--111-11121131-111111121111111111--11311111414111-21222122211I11112656B3252254955 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 404 STR:RPRED 94.6 SQ:SECSTR #cccHHTHHHHHHHHcccTTccHHHHHHcccEEEEEcTEEEETTccEEEETTHHHHTcccccccHHHHHHHHHHHTTcccccccccccHHHHHHHHHHHHHccTTEEEEEEEccHHHHHHHHHHHHHHHHHHTTcTTccEEEEEccEEEccccGGGcccccTTTTccccGGGcccEEEEcccHHHHHHHHHHHHHHHHHHHGGGEEEEEEEccEETTTTcEEccTTHHHHHHHHHHHTTcEEEEEcTTTTTTTTccccGGGGGTccccEEEEcGGGGTTccccEEEEEEHHHHHTTGGGccccccccccTTcHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTcTTEEEEEEETTEEEEEEcccTTTcHHHHHHHHTTEEccEETTEEEEcccTTcc###################### DISOP:02AL 1-3| PSIPRED ccccHHHHHHHHHHHHcccccccccccccEEEEEccccEEEEcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccHHHEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEccccccccHHHcccEEEccccEEEHEEEEHHHHccccEEEEEEEcHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEEEEEEccccHHHHHHHHHHccEEEEEcccEEEEcccccccHHHHHHHHHHHHHHHHHccccc //