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Nocardia farcinica IFM 10152 (nfar0)
Gene : clpX
DDBJ      :clpX         putative Clp protease ATP-binding subunit
Swiss-Prot:CLPX_NOCFA   RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpX;

Homologs  Archaea  0/68 : Bacteria  880/915 : Eukaryota  173/199 : Viruses  0/175   --->[See Alignment]
c.37.1c.47.1g.39.1
:426 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   8->43 2ds5B PDBj 2e-14 80.6 %
:BLT:PDB   58->388 1um8A PDBj 7e-78 54.8 %
:RPS:PDB   11->43 2ds7A PDBj 2e-12 75.8 %
:RPS:PDB   61->244 2cvxA PDBj 3e-31 17.0 %
:RPS:PDB   281->389 2dlaB PDBj 6e-22 17.0 %
:RPS:SCOP  12->85 1aazA  c.47.1.1 * 1e-09 6.8 %
:RPS:SCOP  64->389 1do0A  c.37.1.20 * 5e-36 30.4 %
:HMM:SCOP  10->47 1ovxA_ g.39.1.11 * 4.1e-12 71.1 %
:HMM:SCOP  57->405 1um8A_ c.37.1.20 * 9.7e-77 35.8 %
:RPS:PFM   11->43 PF06689 * zf-C4_ClpX 2e-14 84.8 %
:RPS:PFM   112->311 PF07724 * AAA_2 1e-26 54.5 %
:RPS:PFM   317->380 PF10431 * ClpB_D2-small 2e-13 62.3 %
:HMM:PFM   114->310 PF07724 * AAA_2 3.8e-52 44.5 164/171  
:HMM:PFM   11->49 PF06689 * zf-C4_ClpX 9.7e-24 82.1 39/41  
:HMM:PFM   317->401 PF10431 * ClpB_D2-small 1.3e-20 38.3 81/89  
:BLT:SWISS 1->426 CLPX_NOCFA 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56180.1 GT:GENE clpX GT:PRODUCT putative Clp protease ATP-binding subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1494150..1495430 GB:FROM 1494150 GB:TO 1495430 GB:DIRECTION + GB:GENE clpX GB:PRODUCT putative Clp protease ATP-binding subunit GB:PROTEIN_ID BAD56180.1 LENGTH 426 SQ:AASEQ MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAESSEVKLDELPKPAEIREFLENYVIGQDAAKRTLAVAVYNHYKRIQAGDKGRDSRGETVELTKSNILMLGPTGCGKTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGIIYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVLFIVAGAFAGLEKIISDRTGHRGIGFGAEVRSKAEIDTTDHFADVMPEDLIKFGLIPEFIGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTQDALEAIADQAILRGTGARGLRAIMEEVLLPVMYDIPSRDDVARVVVTADTVNDNVLPTIVPRKPQRPERRDKSA GT:EXON 1|1-426:0| SW:ID CLPX_NOCFA SW:DE RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpX; SW:GN Name=clpX; OrderedLocusNames=NFA_13350; SW:KW ATP-binding; Chaperone; Complete proteome; Metal-binding;Nucleotide-binding; Zinc; Zinc-finger. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->426|CLPX_NOCFA|0.0|100.0|426/426| GO:SWS:NREP 3 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| SEG 44->55|eiieeelaesse| SEG 390->407|rddvarvvvtadtvndnv| BL:PDB:NREP 2 BL:PDB:REP 8->43|2ds5B|2e-14|80.6|36/44| BL:PDB:REP 58->388|1um8A|7e-78|54.8|292/327| RP:PDB:NREP 3 RP:PDB:REP 11->43|2ds7A|2e-12|75.8|33/39| RP:PDB:REP 61->244|2cvxA|3e-31|17.0|176/664| RP:PDB:REP 281->389|2dlaB|6e-22|17.0|106/214| RP:PFM:NREP 3 RP:PFM:REP 11->43|PF06689|2e-14|84.8|33/40|zf-C4_ClpX| RP:PFM:REP 112->311|PF07724|1e-26|54.5|156/160|AAA_2| RP:PFM:REP 317->380|PF10431|2e-13|62.3|61/90|ClpB_D2-small| HM:PFM:NREP 3 HM:PFM:REP 114->310|PF07724|3.8e-52|44.5|164/171|AAA_2| HM:PFM:REP 11->49|PF06689|9.7e-24|82.1|39/41|zf-C4_ClpX| HM:PFM:REP 317->401|PF10431|1.3e-20|38.3|81/89|ClpB_D2-small| GO:PFM:NREP 5 GO:PFM GO:0008270|"GO:zinc ion binding"|PF06689|IPR010603| GO:PFM GO:0016887|"GO:ATPase activity"|PF06689|IPR010603| GO:PFM GO:0019538|"GO:protein metabolic process"|PF06689|IPR010603| GO:PFM GO:0046983|"GO:protein dimerization activity"|PF06689|IPR010603| GO:PFM GO:0005524|"GO:ATP binding"|PF07724|IPR013093| RP:SCP:NREP 2 RP:SCP:REP 12->85|1aazA|1e-09|6.8|74/87|c.47.1.1| RP:SCP:REP 64->389|1do0A|5e-36|30.4|306/406|c.37.1.20| HM:SCP:REP 10->47|1ovxA_|4.1e-12|71.1|38/38|g.39.1.11|1/1|Glucocorticoid receptor-like (DNA-binding domain)| HM:SCP:REP 57->405|1um8A_|9.7e-77|35.8|346/364|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1812 OP:NHOMOORG 1053 OP:PATTERN -------------------------------------------------------------------- 2221111111111111111-111111111111111111111111111111111111211111111121111111111111111222221111111121-11111112211111111111111111222222222221-111---1211111111111111111111111111111111111111112211-22233333333333333322222233322222222222222222222222222222222222222212212222211222221111111111111111111111111111111111111111111111111121111111111111111111111211111222222222222222222111221222222222222222222222222122222222-2222222222222222222222222222222222222222222222222212222222222222211222222222222222222222222222222222222222222222222222222221122222322211222223211122111111122222314342222322222211111112145345133221222222222222222222322222222222222222222222222222222222212233222222222222232222232222-22222222222222222222222222222222222222222222222222222222222222222112222222222242222222222222212222111111111132222222222222232222222222223122222222222222222222222212211232233332222222231--------------------------2222222222211 11--111-522-111111111111111111111111111111111111111111111111111---11--11-1-11-111---------1-11111111-11222-2421211122111111122111171-11111112-1111111111121211113222122211B94132332G3222253331322254333 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-7, 49-65, 194-204, 276-285, 409-426| PSIPRED cccccccccEEEEccccccHHHHHHHHcccccEEEHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccccEEEcccccccHHHHHHHHHHHHcccEEEEEHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHcccccccccccccHHHHHHHHHHHcccEEEEccccccEEccccEEEEEccHHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEHHHHcccccEEEEcccccccHHHcccc //