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Nocardia farcinica IFM 10152 (nfar0)
Gene : cobT
DDBJ      :cobT         putative nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  389/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.39.1
:359 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->318 1l5mA PDBj 1e-21 25.4 %
:RPS:PDB   5->312 1d0sA PDBj 1e-37 30.2 %
:RPS:SCOP  26->344 1j33A  c.39.1.1 * 1e-54 34.2 %
:HMM:SCOP  1->346 1d0vA_ c.39.1.1 * 6.9e-113 51.3 %
:RPS:PFM   26->318 PF02277 * DBI_PRT 2e-38 40.8 %
:HMM:PFM   8->343 PF02277 * DBI_PRT 1.7e-122 56.7 323/327  
:BLT:SWISS 4->345 COBT_MYCTU 2e-67 58.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56546.1 GT:GENE cobT GT:PRODUCT putative nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1851742..1852821) GB:FROM 1851742 GB:TO 1852821 GB:DIRECTION - GB:GENE cobT GB:PRODUCT putative nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase GB:PROTEIN_ID BAD56546.1 LENGTH 359 SQ:AASEQ MTHGFGPVAPPDARIRAEAEQRQARLTKPAGSLGRLERLGNWVAACQGVCPPRQFERARVVVFAGDHGVAAHGVSAYPSEVTAQMVANFLAGGAAVNALARVADATVRVVDIAVDADTDPAVSGHKVRRSSGRIDREDALSGEEVEAALAAGRAIADEEIDAGADLLIAGDMGIGNTTPATVLIATLTDTEPVAAVGRGTGVDDAGWIRKVAAIRDAMRRARPVHKDPVDLLRVAASADIAATAGFLAQAAVRRTPVLLDGVVVTAAALVAEDLAAGASAWWLAGHRSTEPAHALALRQLRLDPLIDMEMRLGEGSGALTALPILRAAVAALAEMATFDEAGVSTAAPTAAESALNLRK GT:EXON 1|1-359:0| BL:SWS:NREP 1 BL:SWS:REP 4->345|COBT_MYCTU|2e-67|58.2|342/361| SEG 13->25|ariraeaeqrqar| SEG 87->122|anflaggaavnalarvadatvrvvdiavdadtdpav| SEG 154->165|aiadeeidagad| SEG 257->285|vlldgvvvtaaalvaedlaagasawwlag| SEG 321->336|alpilraavaalaema| BL:PDB:NREP 1 BL:PDB:REP 8->318|1l5mA|1e-21|25.4|311/342| RP:PDB:NREP 1 RP:PDB:REP 5->312|1d0sA|1e-37|30.2|308/346| RP:PFM:NREP 1 RP:PFM:REP 26->318|PF02277|2e-38|40.8|292/335|DBI_PRT| HM:PFM:NREP 1 HM:PFM:REP 8->343|PF02277|1.7e-122|56.7|323/327|DBI_PRT| GO:PFM:NREP 2 GO:PFM GO:0008939|"GO:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity"|PF02277|IPR003200| GO:PFM GO:0009236|"GO:cobalamin biosynthetic process"|PF02277|IPR003200| RP:SCP:NREP 1 RP:SCP:REP 26->344|1j33A|1e-54|34.2|316/333|c.39.1.1| HM:SCP:REP 1->346|1d0vA_|6.9e-113|51.3|343/346|c.39.1.1|1/1|Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)| OP:NHOMO 409 OP:NHOMOORG 389 OP:PATTERN -------------------------------------------------------------------- ---1211111112111111-111111111111111111111111----------------11221212221----------11-----11------------1--1-1-----------------1111111111111111---1--------------------------------------111------1--------------1--1-------111----------11--------------------------------------------------------------------------------1----------1-11-------1-111111111111----11111111---12-----11-1-1---111-1111-1---1112111111111111-21111111-1--1111111111111----111111111111111111-11-1111-------------------------------1--------111111111111111111111111-111--1111211-1111----111--11----------1-1-121--11111111--11211111-----1-1-----------------------------2-11---1-11111-1111111111111----11-------1---1--1111111111-111111111111111111-222--11-1111111111111111-1111111--1------------------------111-1-----------------------1111111111111-1-11111-------------1111111--11--11111111------1---1111--------1---------------------------11-22-1-----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 314 STR:RPRED 87.5 SQ:SECSTR ####HHTcccccHHHHHHHHHHHHTccccTTTTTHHHHHHHHHHTcGGGTTcccccEEEEEEEEEccGGGGGTcccccTTHHHHHHHHHHHTccHHHHHHHHTTcEEEEEEEEccccccTTcEEcccccccccTTTcccccHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEcTTTHHHHHHHHHHHHTccHHHHcccTTTccGGGHHHHHHHHHHHHHHHcccTTcHHHHHHHHccHHHHHHHHHHHHHHHTTccEEcccHHHHHHHHHHHHHcGGGGGGEEcccccccTTHHHHHHHTTccccccccccccTTHHH######################################### DISOP:02AL 351-354, 358-359| PSIPRED ccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccEEEEEEccccEEccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEEEcccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHcccccHHcccEEccHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccHHHHHHccc //