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Nocardia farcinica IFM 10152 (nfar0)
Gene : crtE1
DDBJ      :crtE1        putative geranylgeranyl pyrophosphate synthase
Swiss-Prot:             

Homologs  Archaea  57/68 : Bacteria  448/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
a.128.1
:383 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   63->341 1wy0A PDBj 1e-20 30.4 %
:RPS:PDB   50->353 2e90A PDBj 5e-39 15.7 %
:RPS:SCOP  29->293 1rqiA  a.128.1.1 * 4e-34 26.1 %
:HMM:SCOP  22->383 1ubyA_ a.128.1.1 * 1.4e-74 37.5 %
:RPS:PFM   68->303 PF00348 * polyprenyl_synt 1e-18 39.4 %
:HMM:PFM   64->140 PF00348 * polyprenyl_synt 3.5e-16 40.3 72/260  
:HMM:PFM   151->322 PF00348 * polyprenyl_synt 2.8e-30 34.7 167/260  
:BLT:SWISS 72->350 GGPS_SULSO 2e-17 29.4 %
:PROS 259->271|PS00444|POLYPRENYL_SYNTHET_2
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56585.1 GT:GENE crtE1 GT:PRODUCT putative geranylgeranyl pyrophosphate synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1891162..1892313) GB:FROM 1891162 GB:TO 1892313 GB:DIRECTION - GB:GENE crtE1 GB:PRODUCT putative geranylgeranyl pyrophosphate synthase GB:PROTEIN_ID BAD56585.1 LENGTH 383 SQ:AASEQ MTLEVPLSAGPGTPTRTPVAGAPAPTLGSAEFVASVQAVLSDFFTSRRPAVRALGPVFEEAADALEAFVLRGGKRTRPAFAWTGWLGAGGSPTAPEADAVLTACAALELVQACALVHDDIIDSSRTRRRFPTVHVDFEQRHRERGWTGDPAHFGVSVAILIGDLALAWADDMVHASGLDAAAIGRFAPVWALMRTEVLGGQLLDINGEAGRDDSVEAALRINRYKTAAYTVERPLHLGAAIADADAELVAAYRTFGTDIGVAFQLRDDLLGVFGDPEVTGKPSGDDLREGKRTVLLAEALRRADATDPAAASLLRTSIGTDLAAEEVERLRAVLIDLGAVDDVERRIADLTDRGLAALETSSAAPAAKQTLRGMALAATRRTA GT:EXON 1|1-383:0| BL:SWS:NREP 1 BL:SWS:REP 72->350|GGPS_SULSO|2e-17|29.4|255/332| PROS 259->271|PS00444|POLYPRENYL_SYNTHET_2|PDOC00407| TM:NTM 1 TM:REGION 150->172| SEG 118->129|ddiidssrtrrr| SEG 239->251|aaiadadaelvaa| SEG 355->367|laaletssaapaa| BL:PDB:NREP 1 BL:PDB:REP 63->341|1wy0A|1e-20|30.4|253/327| RP:PDB:NREP 1 RP:PDB:REP 50->353|2e90A|5e-39|15.7|274/299| RP:PFM:NREP 1 RP:PFM:REP 68->303|PF00348|1e-18|39.4|213/246|polyprenyl_synt| HM:PFM:NREP 2 HM:PFM:REP 64->140|PF00348|3.5e-16|40.3|72/260|polyprenyl_synt| HM:PFM:REP 151->322|PF00348|2.8e-30|34.7|167/260|polyprenyl_synt| GO:PFM:NREP 1 GO:PFM GO:0008299|"GO:isoprenoid biosynthetic process"|PF00348|IPR000092| RP:SCP:NREP 1 RP:SCP:REP 29->293|1rqiA|4e-34|26.1|245/300|a.128.1.1| HM:SCP:REP 22->383|1ubyA_|1.4e-74|37.5|339/0|a.128.1.1|1/1|Terpenoid synthases| OP:NHOMO 737 OP:NHOMOORG 516 OP:PATTERN 1111111-11111111-1---1---1111-1111111111111111111111111111111111--11 ---1411333322224444-4311524444433555322212222321222332232222331233735621111111111111----1112-211---11111211111--------------111121111112111------121-111---221111111111---1-111--11-1--11111-1-11-11111111-11111111----11-111--21111-11--1----------------------------------------------------------------------------------111----1---------------------------1-1212211211121--11----1-1---21211----------111------------11111111----1---------1111111---------122222222-111-121-----------------------------------1-1111111111----1111------111111111-1111---1-1111---1-111-1111111--111--1-2212--1111--1-11111-1----12-1--1--111111--------------112-112----1-11111--1---11-1211-----1-1------22-1-212222222222-2222222222222222221-1-22222222222222222222212222222--1------------------------1111--------11-11--11111111-2-1-11112121112111112---------1111------11-1111---------111--------11------------------------------------1---1-----1-- ------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------211--111-11--2----1----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 354 STR:RPRED 92.4 SQ:SECSTR ############################HHHHHHTHHHHHHHHTcccHHHHHHHHTccccccHHHHHHHTHHHHHHcTHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccEETTEEcHHGTTccEETTTTEEcGGHHHcHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTTccHHHHHHHHHHHTHHHHTHHHHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccTTTcccHHHHHTcccHHHHHHHHHHHccHHTTcHHHHHHHHHHHTcccHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHTTTcT# DISOP:02AL 1-2, 7-26| PSIPRED cccEEcccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccc //