Nocardia farcinica IFM 10152 (nfar0)
Gene : crtL1
DDBJ :crtL1 putative lycopene cyclase
Swiss-Prot:
Homologs Archaea 0/68 : Bacteria 34/915 : Eukaryota 20/199 : Viruses 0/175 --->[See Alignment]
c.3.1
c.72.3
:396 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB 6->61 1d5tA PDBj 1e-06 26.8 %
:RPS:SCOP 5->43 1p9oA c.72.3.1 * 2e-06 17.9 %
:HMM:SCOP 7->326 2gmhA1 c.3.1.2 * 4.1e-12 22.7 %
:RPS:PFM 9->361 PF05834 * Lycopene_cycl 6e-37 34.9 %
:HMM:PFM 9->333 PF05834 * Lycopene_cycl 1.4e-42 24.7 320/374
:BLT:SWISS 3->361 NXS_SOLTU 4e-26 29.1 %
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55574.1
GT:GENE crtL1
GT:PRODUCT putative lycopene cyclase
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION complement(791146..792336)
GB:FROM 791146
GB:TO 792336
GB:DIRECTION -
GB:GENE crtL1
GB:PRODUCT putative lycopene cyclase
GB:PROTEIN_ID BAD55574.1
LENGTH 396
SQ:AASEQ MGSGGKEADVCVVGLGPTGRALAHRAMRAGLRVLAVDPRPERLWPPTFSCWIDELPDWLPATAIASRIDAPTVWTRTAHRIQRPYCVLSKPGLRDALPLDDATVLAGRATRVDAHEVELADGTLLRAGTVFDTRGLPTVGQRRAASAHGIFVDAETAAPMVAEGEGLLLDWRPENGAGPDEPPSFLYAVPLGDGTVIFEETSLGLRGGMPQHELRKRTLNRLAAHGIRLTGEEPSEAAHYPLDQPPPRRGTARAVPFGSRGGMMHPCTGYSVADSLALADTAVQAVLAGADPVAALWPRAARLVYWMRMRGLYGLGRLTTDQSIAMFESFFTQSERGQRALLSAHADFTALGAVLVDTVAHTWPFRWRYDLVGWTNRNRWVGYEFAPARAASPERG
GT:EXON 1|1-396:0|
BL:SWS:NREP 1
BL:SWS:REP 3->361|NXS_SOLTU|4e-26|29.1|350/498|
RP:PDB:NREP 1
RP:PDB:REP 6->61|1d5tA|1e-06|26.8|56/433|
RP:PFM:NREP 1
RP:PFM:REP 9->361|PF05834|6e-37|34.9|344/368|Lycopene_cycl|
HM:PFM:NREP 1
HM:PFM:REP 9->333|PF05834|1.4e-42|24.7|320/374|Lycopene_cycl|
GO:PFM:NREP 2
GO:PFM GO:0016117|"GO:carotenoid biosynthetic process"|PF05834|IPR008671|
GO:PFM GO:0016705|"GO:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"|PF05834|IPR008671|
RP:SCP:NREP 1
RP:SCP:REP 5->43|1p9oA|2e-06|17.9|39/269|c.72.3.1|
HM:SCP:REP 7->326|2gmhA1|4.1e-12|22.7|229/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain|
OP:NHOMO 94
OP:NHOMOORG 54
OP:PATTERN -------------------------------------------------------------------- -------1-------------1----------1---2111------------------------1-1------------------------------------------------------------------------11-----1--------11111111--------122222122212-11--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------2------------------------------------------------------------------1222E212124224-2211----1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 318
STR:RPRED 80.3
SQ:SECSTR ccccEccccEEEEcccHHHHHHHHHHHHTTccEEEEcccccccTTccEEccHHHHHHHTTcHHHTTcTTccEEEEccccHHHHHHHHHHHHHHHHHHTcTTEEEEcccEEEEEEETEEETTccEEEEEEEEEccTEETTcEEEEEEEEEEcccGGGccccEEEccccccEEEEEEETTEEEEEEEEEccccEEEEEEEcHHHHHHTTccccHHHHHHHHHHHTHHHHTTccccccTTTccEEEEccccccEETEEEcGGGTccccGGGccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH##############################################################################
DISOP:02AL 1-5, 391-396|
PSIPRED ccccccEEEEEEEcccHHHHHHHHHHHHccccEEEEEcccccccccEEEEEcHHHHHHHHHHHHHHcccccEEEcccccccccccEEEcHHHHHHHHHHccEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEccccccccccccccEEEEEEEEEEcccccccccEEEEEEEcccccccccccEEEEEEEccccEEEEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEEccEEEEEccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHccccccEEEEEEHEEccccEEEEEEEccccccccccc
//
[GTOP]
