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Nocardia farcinica IFM 10152 (nfar0)
Gene : crtL1
DDBJ      :crtL1        putative lycopene cyclase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  34/915 : Eukaryota  20/199 : Viruses  0/175   --->[See Alignment]
c.3.1c.72.3
:396 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   6->61 1d5tA PDBj 1e-06 26.8 %
:RPS:SCOP  5->43 1p9oA  c.72.3.1 * 2e-06 17.9 %
:HMM:SCOP  7->326 2gmhA1 c.3.1.2 * 4.1e-12 22.7 %
:RPS:PFM   9->361 PF05834 * Lycopene_cycl 6e-37 34.9 %
:HMM:PFM   9->333 PF05834 * Lycopene_cycl 1.4e-42 24.7 320/374  
:BLT:SWISS 3->361 NXS_SOLTU 4e-26 29.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55574.1 GT:GENE crtL1 GT:PRODUCT putative lycopene cyclase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(791146..792336) GB:FROM 791146 GB:TO 792336 GB:DIRECTION - GB:GENE crtL1 GB:PRODUCT putative lycopene cyclase GB:PROTEIN_ID BAD55574.1 LENGTH 396 SQ:AASEQ MGSGGKEADVCVVGLGPTGRALAHRAMRAGLRVLAVDPRPERLWPPTFSCWIDELPDWLPATAIASRIDAPTVWTRTAHRIQRPYCVLSKPGLRDALPLDDATVLAGRATRVDAHEVELADGTLLRAGTVFDTRGLPTVGQRRAASAHGIFVDAETAAPMVAEGEGLLLDWRPENGAGPDEPPSFLYAVPLGDGTVIFEETSLGLRGGMPQHELRKRTLNRLAAHGIRLTGEEPSEAAHYPLDQPPPRRGTARAVPFGSRGGMMHPCTGYSVADSLALADTAVQAVLAGADPVAALWPRAARLVYWMRMRGLYGLGRLTTDQSIAMFESFFTQSERGQRALLSAHADFTALGAVLVDTVAHTWPFRWRYDLVGWTNRNRWVGYEFAPARAASPERG GT:EXON 1|1-396:0| BL:SWS:NREP 1 BL:SWS:REP 3->361|NXS_SOLTU|4e-26|29.1|350/498| RP:PDB:NREP 1 RP:PDB:REP 6->61|1d5tA|1e-06|26.8|56/433| RP:PFM:NREP 1 RP:PFM:REP 9->361|PF05834|6e-37|34.9|344/368|Lycopene_cycl| HM:PFM:NREP 1 HM:PFM:REP 9->333|PF05834|1.4e-42|24.7|320/374|Lycopene_cycl| GO:PFM:NREP 2 GO:PFM GO:0016117|"GO:carotenoid biosynthetic process"|PF05834|IPR008671| GO:PFM GO:0016705|"GO:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"|PF05834|IPR008671| RP:SCP:NREP 1 RP:SCP:REP 5->43|1p9oA|2e-06|17.9|39/269|c.72.3.1| HM:SCP:REP 7->326|2gmhA1|4.1e-12|22.7|229/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 94 OP:NHOMOORG 54 OP:PATTERN -------------------------------------------------------------------- -------1-------------1----------1---2111------------------------1-1------------------------------------------------------------------------11-----1--------11111111--------122222122212-11--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------2------------------------------------------------------------------1222E212124224-2211----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 318 STR:RPRED 80.3 SQ:SECSTR ccccEccccEEEEcccHHHHHHHHHHHHTTccEEEEcccccccTTccEEccHHHHHHHTTcHHHTTcTTccEEEEccccHHHHHHHHHHHHHHHHHHTcTTEEEEcccEEEEEEETEEETTccEEEEEEEEEccTEETTcEEEEEEEEEEcccGGGccccEEEccccccEEEEEEETTEEEEEEEEEccccEEEEEEEcHHHHHHTTccccHHHHHHHHHHHTHHHHTTccccccTTTccEEEEccccccEETEEEcGGGTccccGGGccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH############################################################################## DISOP:02AL 1-5, 391-396| PSIPRED ccccccEEEEEEEcccHHHHHHHHHHHHccccEEEEEcccccccccEEEEEcHHHHHHHHHHHHHHcccccEEEcccccccccccEEEcHHHHHHHHHHccEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEccccccccccccccEEEEEEEEEEcccccccccEEEEEEEcccccccccccEEEEEEEccccEEEEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEEccEEEEEccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHccccccEEEEEEHEEccccEEEEEEEccccccccccc //