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Nocardia farcinica IFM 10152 (nfar0)
Gene : deoA
DDBJ      :deoA         putative thymidine phosphorylase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  454/915 : Eukaryota  39/199 : Viruses  0/175   --->[See Alignment]
a.46.2c.27.1d.41.3
:427 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->426 1brwA PDBj 9e-76 40.8 %
:RPS:PDB   4->426 2dsjA PDBj 3e-66 44.5 %
:RPS:SCOP  4->73 1gxbA1  a.46.2.1 * 3e-12 17.1 %
:RPS:SCOP  77->319 1azyA2  c.27.1.1 * 7e-74 49.4 %
:RPS:SCOP  325->427 1azyA3  d.41.3.1 * 1e-10 25.2 %
:HMM:SCOP  4->73 1brwA1 a.46.2.1 * 9.2e-20 40.0 %
:HMM:SCOP  71->329 2tptA2 c.27.1.1 * 3.7e-77 51.4 %
:HMM:SCOP  324->427 1brwA3 d.41.3.1 * 1.7e-26 36.9 %
:RPS:PFM   78->230 PF00591 * Glycos_transf_3 4e-11 39.5 %
:RPS:PFM   339->411 PF07831 * PYNP_C 1e-06 32.9 %
:HMM:PFM   80->298 PF00591 * Glycos_transf_3 6e-39 18.8 213/254  
:HMM:PFM   339->411 PF07831 * PYNP_C 6.6e-25 39.7 73/75  
:HMM:PFM   7->69 PF02885 * Glycos_trans_3N 8.2e-18 31.7 63/66  
:BLT:SWISS 3->426 TYPH_MYCTU e-120 61.8 %
:PROS 113->128|PS00647|THYMID_PHOSPHORYLASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55796.1 GT:GENE deoA GT:PRODUCT putative thymidine phosphorylase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1052167..1053450 GB:FROM 1052167 GB:TO 1053450 GB:DIRECTION + GB:GENE deoA GB:PRODUCT putative thymidine phosphorylase GB:PROTEIN_ID BAD55796.1 LENGTH 427 SQ:AASEQ MTALDAVSLITTKRDGGQLSDEQIDWVIDAFTRGAVADEQMAALAMAILLRGMTRRETARWTAAMIASGQRMDFTDLPRPTVDKHSTGGVGDKITLPLAPLVAACGAAVPQLSGRGLGHTGGTLDKLESIPGWRADVPVARMREILADPAIGAVICAAGADLAPADKRLYALRDVTGTVESVPLIASSIMSKKIAEGTAALVLDVKVGSGAFMKDRATATELATTMVELGADAGVRTVALLTAMDSPLGRTAGNALEVAEAVAVLAGGGPADVVELTLALAREMVALAGLDTDPADVLASGRAMDHWRAMVRAQGGDPDAPLPRATHTEILRADRDGVLTRLDAMGVGVAAWRLGAGRARQGDPVQHGAGVALHAGVGDRVTAGQALCTLHTDTPEAFDSAAAALREGIEIGDAAAGTGPLVLDRIG GT:EXON 1|1-427:0| BL:SWS:NREP 1 BL:SWS:REP 3->426|TYPH_MYCTU|e-120|61.8|421/427| PROS 113->128|PS00647|THYMID_PHOSPHORYLASE|PDOC00557| SEG 252->274|agnalevaeavavlagggpadvv| SEG 367->378|hgagvalhagvg| BL:PDB:NREP 1 BL:PDB:REP 7->426|1brwA|9e-76|40.8|417/433| RP:PDB:NREP 1 RP:PDB:REP 4->426|2dsjA|3e-66|44.5|418/423| RP:PFM:NREP 2 RP:PFM:REP 78->230|PF00591|4e-11|39.5|147/252|Glycos_transf_3| RP:PFM:REP 339->411|PF07831|1e-06|32.9|73/75|PYNP_C| HM:PFM:NREP 3 HM:PFM:REP 80->298|PF00591|6e-39|18.8|213/254|Glycos_transf_3| HM:PFM:REP 339->411|PF07831|6.6e-25|39.7|73/75|PYNP_C| HM:PFM:REP 7->69|PF02885|8.2e-18|31.7|63/66|Glycos_trans_3N| GO:PFM:NREP 4 GO:PFM GO:0008152|"GO:metabolic process"|PF00591|IPR000312| GO:PFM GO:0016757|"GO:transferase activity, transferring glycosyl groups"|PF00591|IPR000312| GO:PFM GO:0006213|"GO:pyrimidine nucleoside metabolic process"|PF07831|IPR013102| GO:PFM GO:0016763|"GO:transferase activity, transferring pentosyl groups"|PF07831|IPR013102| RP:SCP:NREP 3 RP:SCP:REP 4->73|1gxbA1|3e-12|17.1|70/70|a.46.2.1| RP:SCP:REP 77->319|1azyA2|7e-74|49.4|241/265|c.27.1.1| RP:SCP:REP 325->427|1azyA3|1e-10|25.2|103/105|d.41.3.1| HM:SCP:REP 4->73|1brwA1|9.2e-20|40.0|70/70|a.46.2.1|1/1|Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain| HM:SCP:REP 71->329|2tptA2|3.7e-77|51.4|257/0|c.27.1.1|1/1|Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain| HM:SCP:REP 324->427|1brwA3|1.7e-26|36.9|103/103|d.41.3.1|1/1|Pyrimidine nucleoside phosphorylase C-terminal domain| OP:NHOMO 591 OP:NHOMOORG 523 OP:PATTERN --1--1----------1------2-------1---111111111111111111-1111111------- 1-1-11------1-11111-31--1111111111111111-11111111111111112--1111211111--------1---1---------------------1---1-------------------------1-1-1-----1--------------------------------------1111111-111222222221222222111111222111111111111111111111111111111111111-1-11-------11111-----111---111111111111111111-------------11111-11111111-1111111111111111111111-11-11111111111111111-11-1---2-------1111--111-1------------11-11-11211-1111111111111---11111111211--------------1--------------------------------1-1-------1111--1-11----1111-11--122---2211--2---11---------1--------------1-----------------------111111-----------------------------112---11--11111111111111111111--1----------11111111111111111-1111111111111111111111111-11111111111111111111111111-1--112211111---2------1111-11-----------------------------------------1-------------11111111111111--------------------------------1-1----1-11121111111111111111111111111-2- ------1-------------------------------------------------------------------------------------------------------112111-1--111-121217G1-113-1-1--1---111-1--11--11----512-------1------------------11----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 423 STR:RPRED 99.1 SQ:SECSTR ###ccHHHHHHHHHTTccccHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHTcccccccTTcccccEEEEEEccccccTHHHHHHHHHTTTccEEEEcccccTTcccHHHHHTTcTTccccccHHHHHHHHHHHcTcEEEEccGGGccHHHHHHHHHHHTTTccccHHHHHHHHHHHHHHHTccEEEEEEEEcccTTcccHHHHHHHHHHHHHHHHHTTcEEEEEEEEcccccccEEEcHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHTTccTHHHHHHHTcHHHHHHHHHHHHTTccGGGGGccccEEEEEEccccEEEEEEcHHHHHHHHHHHTcccccTTccccTTcEEEEcccTTcEEcTTcEEEEEEEcccccHHHHHHHHHHHEEEEcccccccccEEEEc# DISOP:02AL 1-2| PSIPRED cccHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccEEccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHccccccccHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHccccHHccccccEEEEEEcccccEEEEEcHHHHHHHHHHHccccccccccccccccEEEEcccccEEEcccEEEEEEEccHHHHHHHHHHHHHHcEEcccccccccEEEEEcc //