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Nocardia farcinica IFM 10152 (nfar0)
Gene : dnaE
DDBJ      :dnaE         putative DNA polymerase III alpha subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  909/915 : Eukaryota  3/199 : Viruses  3/175   --->[See Alignment]
b.29.1b.40.4b.42.4c.6.3d.58.1
:1196 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->1006 2hpiA PDBj 0.0 46.1 %
:RPS:PDB   21->1171 3e0dA PDBj 0.0 41.2 %
:RPS:SCOP  93->195 1q16B  d.58.1.5 * 5e-19 13.7 %
:RPS:SCOP  323->470 1r8nA  b.42.4.1 * 2e-30 12.9 %
:RPS:SCOP  726->902 1kitA2  b.29.1.8 * 6e-41 7.6 %
:RPS:SCOP  993->1122 1asyA1  b.40.4.1 * 1e-16 15.2 %
:HMM:SCOP  21->286 1m65A_ c.6.3.1 * 2.8e-30 28.3 %
:RPS:PFM   25->182 PF02811 * PHP 9e-16 37.9 %
:RPS:PFM   332->774 PF07733 * DNA_pol3_alpha e-125 54.3 %
:HMM:PFM   332->774 PF07733 * DNA_pol3_alpha 2.9e-165 53.9 421/422  
:HMM:PFM   23->214 PF02811 * PHP 6.3e-47 36.9 168/175  
:HMM:PFM   1035->1109 PF01336 * tRNA_anti 6.6e-10 29.2 72/76  
:HMM:PFM   873->916 PF04919 * DUF655 0.00027 23.3 43/181  
:HMM:PFM   936->1026 PF03063 * Prismane 0.00065 27.1 85/511  
:BLT:SWISS 16->1196 DPO3A_MYCTU 0.0 78.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56646.1 GT:GENE dnaE GT:PRODUCT putative DNA polymerase III alpha subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1961862..1965452 GB:FROM 1961862 GB:TO 1965452 GB:DIRECTION + GB:GENE dnaE GB:PRODUCT putative DNA polymerase III alpha subunit GB:PROTEIN_ID BAD56646.1 LENGTH 1196 SQ:AASEQ MRQPPSRHLGGRTVLAASSGSFVHLHNHTEYSMLDGAAKISPLFTEAKRLGMTAVGMTDHGNMYGASEFYNSAKKHGLKPIIGIEAYIAPGSRFDTKRVQWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKLSSLASIEGQLGKWARMDAEIIAQHAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQEIFGPDNFFLEVMDHGLSIERRVREGLLDIGRKLGIPPLATNDCHYVYESDAANHEALLCVQTGKTLSDPTRFKFDGSGYYLKSGDEMRAIWDAEVPGACDNTLLIGERVQSYDAVWEHRDRMPIFPVPEGETQASWLHKEVMRGLERRFPNGVPEEYLRRAEYELDVICEMGFPAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQISKALPPPIMAKDIPLSGIMDPEHERYKEAAEVRELIANNPDVAKIYETARGLEGLIRNAGVHACAVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALDNIKANRGIDLDMDNLPLDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVYQEQIMQIAQKVAGYSLGRADILRRAMGKKKAEVLEAEFEGFEAGMLENGFSKPAIKALWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRRLGITVLPPDVNESEQNFASVGKDIRFGLGAVRNVGANVVASIIQARKEKSKFTDFSDYLNKIDAIACTKKVTESLIKAGAFDSLGHPRKGLMLIHSDAIDAVMATKKAEAIGQFDLFGGMDADESVTSVFNVKVPDEEWETKHKLALEREMLGLYVSGHPLNGVEHVLAAQADTQIPAILEGDVKDGAQVTIGGILASVNRRINKNGLAWASAQLEDLTGGIEVLFFPQAYSVYGADVVEDAVVLVKARVSVRDDRISLIANDLAVPDLSAIGVAKPLAVTITSRMCTPDKIGELKRVLTRHPGTSDVHVRYVGARDKTTMLKLSDSLRVSPSSALFGDLKALLGPSCLTS GT:EXON 1|1-1196:0| BL:SWS:NREP 1 BL:SWS:REP 16->1196|DPO3A_MYCTU|0.0|78.7|1180/1184| SEG 433->443|dididfddrrr| SEG 623->634|dldmdnlplddp| SEG 874->885|gavrnvganvva| BL:PDB:NREP 1 BL:PDB:REP 22->1006|2hpiA|0.0|46.1|924/1143| RP:PDB:NREP 1 RP:PDB:REP 21->1171|3e0dA|0.0|41.2|1075/1148| RP:PFM:NREP 2 RP:PFM:REP 25->182|PF02811|9e-16|37.9|145/177|PHP| RP:PFM:REP 332->774|PF07733|e-125|54.3|427/428|DNA_pol3_alpha| HM:PFM:NREP 5 HM:PFM:REP 332->774|PF07733|2.9e-165|53.9|421/422|DNA_pol3_alpha| HM:PFM:REP 23->214|PF02811|6.3e-47|36.9|168/175|PHP| HM:PFM:REP 1035->1109|PF01336|6.6e-10|29.2|72/76|tRNA_anti| HM:PFM:REP 873->916|PF04919|0.00027|23.3|43/181|DUF655| HM:PFM:REP 936->1026|PF03063|0.00065|27.1|85/511|Prismane| GO:PFM:NREP 4 GO:PFM GO:0003824|"GO:catalytic activity"|PF02811|IPR004013| GO:PFM GO:0005737|"GO:cytoplasm"|PF07733|IPR011708| GO:PFM GO:0006260|"GO:DNA replication"|PF07733|IPR011708| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF07733|IPR011708| RP:SCP:NREP 4 RP:SCP:REP 93->195|1q16B|5e-19|13.7|102/509|d.58.1.5| RP:SCP:REP 323->470|1r8nA|2e-30|12.9|140/185|b.42.4.1| RP:SCP:REP 726->902|1kitA2|6e-41|7.6|170/197|b.29.1.8| RP:SCP:REP 993->1122|1asyA1|1e-16|15.2|125/137|b.40.4.1| HM:SCP:REP 21->286|1m65A_|2.8e-30|28.3|205/0|c.6.3.1|1/1|PHP domain-like| OP:NHOMO 1354 OP:NHOMOORG 915 OP:PATTERN -------------------------------------------------------------------- 3222222222222222222-22112222222222222222222232222211242221112222113232111112111111211111111111111112131224141311111111111111111111-11111111111111222212221122111111222122221111111111112111111132111111111111112111222211122222111111112222222222222222222322122222221212222222121212122221221122111111111111111111111111122222222122221232222212112111213122113112122121212321112112212322211111222223222222222122221213122223222322-3442332333232322232221222221111111124221211111111111111111111111111111111222212221242532232222333223222224222221122223422222231222211111111111111222222131111111111121211112122222212111111111111111111111111122111222121112111111111112112111111122111111111111111111111111-11111111111111111111111111111111111111211111111111111112112222111111111111111121211111111111-11111111111111111222222222222222221111111111111111111222222222222222111111111111111111111111111111-11111111111111111112211221222121 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1--------------3---------- --------------1-----------------------------------------------------------------1---------------------------------------------1------------------------------------------------ STR:NPRED 1145 STR:RPRED 95.7 SQ:SECSTR #################ccccccccccccTTcTTTccccHHHHHHHHHHHcccEEEEEEETccTTHHHHHHHHHTTTcEEEEEEEEEEEcccTTccccHHHHHHGGGccEEEHHccEEEEEEEEccHHHHHHHHHHHHHHHHTcccccHcEEcHHHHHHTcTTEEEEcccTTcHHHHHHHTTcHHHHHHHHHHHHHHHHGGGEEEEEcccccHHHHHHHHHHHHHHHHTTccEEEccccccccGGGHHHHHHHHHHHTTccccccccccccccccccccHHHHHHHccHHHHcHHHHHHHHHHTcccccccTTcccccccccccccccHHHHHHHHHHHHHHHHcTTTccHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHTTTcccccccGGGGGcHHHHHTTcccccTTTTTccHHHHccTTcccccccEEEEETTTHHHHHHHHHHHHcTTTEEEEEEEccccHHHHHHHHHHH#TTcc#HHHHHHHHTTccccc#cccccTHcccccTTTTTcccTTTTTHHHHcHHHHHHHHHHHHcTTccccEEEcccEEEEccccGGGTccEEEcTGTccEEEEEEHHHHHTTTcEEEEEEEEHHHHHHHHHHHHHHHHHcccccGGGccTTcHHHHHHHHTTccTTcTTcccHHHHHHHHHHccccHHHHHHHHHHccTTGGGHHHHHHHHHHHTTccccccTTTTTHHHHHHHHGGGTTccccHHHHHHHHHHHccccHHHHHHHHHHHHHTcTTTHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHTTTcHHHHHHHHHHHHTTcccEEcccTTTcccccEEETTEEEcccTTcccccHHHHHHHHHHHHHccccccHHHHHHHccTTTccHHHHHHHHHHTTTGGGcccHHHHHHHHHHHHHHHHHHHHHHTTccccccccccccccccc####ccccccccHHHHHHHHHHHHcccccccGGGTcHHHHHccccGGGHHHHHcccccccEEEEEEEEccccEEEcTTccEEEEEEEEETTEEEEEEEETHHHHHHHHHccTTcEEEEEEEEccEEEEEEccHHHEEEccccHTTccccEEEEEcccc#cTTTccHHHHHHHTcEEEEEEEEEEEc#cccEEEEEEEE######################### DISOP:02AL 1-20, 952-961, 1195-1196| PSIPRED cccccccccccccccccccccEEEEEcccccHHHHHcccHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHccccEEEcEEEEEEcccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHccccccccEEcHHHHHHHcccEEEEccccccHHHHHHHcccHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccEEEcEEccccHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccEEEEEcccccEEEcccEEccccccEEEEccHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHccccccHHHcccccHHHHHHHHccccEEEEEcccHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHcccccccccccccHHHHHHHHHHcccccEEcHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEcccEEEccccEEEEcccEEEccHHHccccHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHcccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccccHHHHHHHHHHHHccEEcccHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEEEEEEEEccccccEEEEEEEEccccEEEEEEcHHHHHHHHHHHccccEEEEEEEEEEEccEEEEEEEEEccHHHHHHHcccEEEEEEcHHHccHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEEccccEEcccHHHHHHHHHHcccHHccc 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