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Nocardia farcinica IFM 10152 (nfar0)
Gene : dnaG
DDBJ      :dnaG         putative DNA primase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  901/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
e.13.1g.41.3
:635 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->381 2au3A PDBj 3e-37 30.4 %
:RPS:PDB   2->101 1d0qA PDBj 3e-25 45.5 %
:RPS:PDB   126->430 1ddeA PDBj 2e-65 32.1 %
:RPS:SCOP  2->101 1d0qA  g.41.3.2 * 3e-26 45.5 %
:RPS:SCOP  126->430 1dd9A  e.13.1.1 * 6e-26 31.8 %
:HMM:SCOP  2->104 1d0qA_ g.41.3.2 * 5.4e-35 49.0 %
:HMM:SCOP  116->435 1dd9A_ e.13.1.1 * 2.5e-91 43.9 %
:RPS:PFM   22->98 PF01807 * zf-CHC2 4e-22 52.6 %
:RPS:PFM   127->254 PF08275 * Toprim_N 2e-31 50.8 %
:RPS:PFM   375->430 PF10410 * DnaB_bind 3e-08 44.6 %
:RPS:PFM   480->605 PF08278 * DnaG_DnaB_bind 1e-08 33.3 %
:HMM:PFM   127->255 PF08275 * Toprim_N 5.5e-38 44.1 127/128  
:HMM:PFM   7->101 PF01807 * zf-CHC2 7.8e-37 50.0 94/98  
:HMM:PFM   478->607 PF08278 * DnaG_DnaB_bind 5.2e-22 27.6 123/127  
:HMM:PFM   375->430 PF10410 * DnaB_bind 2.1e-18 42.9 56/59  
:HMM:PFM   263->332 PF01751 * Toprim 8.7e-11 28.8 66/96  
:BLT:SWISS 1->634 PRIM_MYCTU 0.0 60.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56315.1 GT:GENE dnaG GT:PRODUCT putative DNA primase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1651199..1653106 GB:FROM 1651199 GB:TO 1653106 GB:DIRECTION + GB:GENE dnaG GB:PRODUCT putative DNA primase GB:PROTEIN_ID BAD56315.1 LENGTH 635 SQ:AASEQ MAGRLPDRDIAAIRDRVRIEDVVGEYVALKRAGADSMKGLCPFHDEKSPSFHVRPNHGLFHCFGCGEGGDVYKFLQKIEHIGFVEAVEQLADRVGYQINYEGGGTSVQRDRGTRARLVAANAAAHEFYMAQLAEPEAEAARKYLTDRDFDAAAARLFGCGYAPAGWDTLTKHLLRKGFEFKELEAAGLSRQGKRGPIDRFHRRLLWPIRNLGGEVIGFGARKLFDDDTMPGKYVNTPETLLYKKSQVLFGLDHAKREIAKSRQAVVVEGYTDVMAMHLAGVKTAVASCGTAFGDEHMAILRRLLMDDNFWRGEIIYTFDGDAAGQAAAIKAFSGDQKLAGQTYIAIAPDGQDPCELRQRSGDAAVRDLVARRTPLYEFVIRGLLAEHDLDTVEGQVEALRRAVPVVAQIKDNATRKAYATRLAGWVGWDDIQTVVRRVGEEAKRGRTGIAPRRAPAAPAEVAEHPAARPNPNDPVLLPQRQSLCAALQYPAIAGAVFDALEPEVFTHPAYAAIRTMIAEAGGASCGLSGAEWVNAVADATDDLTLRALVSELAGAQLPVKSVNDIPRFITGVLARAQEAYVGRQIATLKSKLQRLSANEQTDEYLALFGDLVALEQYRKSLEAQAMGNSDDFAAG GT:EXON 1|1-635:0| BL:SWS:NREP 1 BL:SWS:REP 1->634|PRIM_MYCTU|0.0|60.2|631/639| SEG 7->21|drdiaairdrvried| SEG 119->124|aanaaa| SEG 151->154|aaaa| SEG 322->331|aagqaaaika| SEG 450->469|aprrapaapaevaehpaarp| BL:PDB:NREP 1 BL:PDB:REP 22->381|2au3A|3e-37|30.4|339/403| RP:PDB:NREP 2 RP:PDB:REP 2->101|1d0qA|3e-25|45.5|99/102| RP:PDB:REP 126->430|1ddeA|2e-65|32.1|293/310| RP:PFM:NREP 4 RP:PFM:REP 22->98|PF01807|4e-22|52.6|76/95|zf-CHC2| RP:PFM:REP 127->254|PF08275|2e-31|50.8|126/129|Toprim_N| RP:PFM:REP 375->430|PF10410|3e-08|44.6|56/59|DnaB_bind| RP:PFM:REP 480->605|PF08278|1e-08|33.3|120/125|DnaG_DnaB_bind| HM:PFM:NREP 5 HM:PFM:REP 127->255|PF08275|5.5e-38|44.1|127/128|Toprim_N| HM:PFM:REP 7->101|PF01807|7.8e-37|50.0|94/98|zf-CHC2| HM:PFM:REP 478->607|PF08278|5.2e-22|27.6|123/127|DnaG_DnaB_bind| HM:PFM:REP 375->430|PF10410|2.1e-18|42.9|56/59|DnaB_bind| HM:PFM:REP 263->332|PF01751|8.7e-11|28.8|66/96|Toprim| GO:PFM:NREP 6 GO:PFM GO:0003677|"GO:DNA binding"|PF01807|IPR002694| GO:PFM GO:0003896|"GO:DNA primase activity"|PF01807|IPR002694| GO:PFM GO:0006260|"GO:DNA replication"|PF01807|IPR002694| GO:PFM GO:0008270|"GO:zinc ion binding"|PF01807|IPR002694| GO:PFM GO:0003896|"GO:DNA primase activity"|PF08278|IPR013173| GO:PFM GO:0006269|"GO:DNA replication, synthesis of RNA primer"|PF08278|IPR013173| RP:SCP:NREP 2 RP:SCP:REP 2->101|1d0qA|3e-26|45.5|99/102|g.41.3.2| RP:SCP:REP 126->430|1dd9A|6e-26|31.8|292/310|e.13.1.1| HM:SCP:REP 2->104|1d0qA_|5.4e-35|49.0|102/0|g.41.3.2|1/1|Zinc beta-ribbon| HM:SCP:REP 116->435|1dd9A_|2.5e-91|43.9|310/314|e.13.1.1|1/1|DNA primase core| OP:NHOMO 941 OP:NHOMOORG 904 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111112111111111411111111151111111111111111111111111111212111--1112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111121211111111111111111111111111111111111111111111121111111111111111111111111111111112111111111111111111111111111-113111111111111111111111111111111111111111111111111111111111111111111222111111111111111112111111111111111111-211111111111111111111111111-1111-11111111331111111111111-111111111111111111111131411111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111-1111111111111111111321211111111111111111111111111-111111-111111-111111111111111111 -------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 433 STR:RPRED 68.2 SQ:SECSTR #cTTccHHHHHHHHHHccHHHHHHHHcccEEETTEEEEEcccccccccccEEEETTTTEEEETTTccEEcHHHHHHHHHTccHHHHHHHHHHHHTccccTT####cccHcccHHHHHHHHHHHHHHHHHHHHTcGGGHHHHHHHHHTTccHHHHHHTTcEEEcccccHHHHHHcccHHHHHHHHHTTcEEEccEEcEEccccEEEEEEEcTTccEEEEEEEEccccccccccEEEccccTTccGGGcccTHHHHHHHccccccEEEEccHHHHHHHHHTTcccEEEcccccccHHHHHHHHHHccEEEETccEEEEEEEEcHHHHHHHHHHHHHHGGGccEEEEEEEEETccHHHHHHHHHHHHHHHHHHTcEEHHHHHHHHHGGGccTTcHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHTcccTHHHTTcc##################################################################################################################################################################################################### DISOP:02AL 1-3, 99-117, 434-475, 589-603, 629-631, 633-635| PSIPRED ccccccHHHHHHHHHHccHHHHHHccccEEEcccccEEEcccccccccccEEEEccccEEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHccEEEcccccEEEEccEEEEEEEcccccEEEEEccEEcccccccccccccccccccccccHHccHHHHHHHHccccEEEEEEcHHHHHHHHHcccccEEHHccccccHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc //