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Nocardia farcinica IFM 10152 (nfar0)
Gene : dnaN
DDBJ      :dnaN         putative DNA polymerase III beta subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  803/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.131.1
:386 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->384 1mmiA PDBj 1e-25 27.9 %
:RPS:PDB   1->383 2awaD PDBj 2e-66 20.8 %
:RPS:SCOP  1->119 1jqjA1  d.131.1.1 * 2e-24 27.7 %
:RPS:SCOP  144->248 1vpkA2  d.131.1.1 * 1e-20 22.7 %
:RPS:SCOP  249->384 1vpkA3  d.131.1.1 * 2e-23 23.1 %
:HMM:SCOP  1->119 1vpkA1 d.131.1.1 * 6.8e-26 31.9 %
:HMM:SCOP  126->248 2polA2 d.131.1.1 * 4.8e-18 31.0 %
:HMM:SCOP  249->384 2polA3 d.131.1.1 * 2.1e-28 39.7 %
:RPS:PFM   1->118 PF00712 * DNA_pol3_beta 4e-11 32.2 %
:RPS:PFM   146->246 PF02767 * DNA_pol3_beta_2 1e-11 42.1 %
:RPS:PFM   250->383 PF02768 * DNA_pol3_beta_3 9e-17 37.8 %
:HMM:PFM   1->118 PF00712 * DNA_pol3_beta 1.2e-38 37.3 118/120  
:HMM:PFM   127->247 PF02767 * DNA_pol3_beta_2 4.7e-33 41.7 115/116  
:HMM:PFM   249->359 PF02768 * DNA_pol3_beta_3 3.7e-34 38.7 111/121  
:BLT:SWISS 1->386 DPO3B_MYCSM e-125 60.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54844.1 GT:GENE dnaN GT:PRODUCT putative DNA polymerase III beta subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2846..4006 GB:FROM 2846 GB:TO 4006 GB:DIRECTION + GB:GENE dnaN GB:PRODUCT putative DNA polymerase III beta subunit GB:PROTEIN_ID BAD54844.1 LENGTH 386 SQ:AASEQ MKFRVAREDFAESVAWVARSLPSRPPVPVLGGVLLVANEDGLTVSGFDYEVSAQMRVAAEVAGPGEVLVSGRLLADITKALSNKPVDVSVDGTRVLITCGSAKFSLPTMPVEDYPQLPEVPQQTGELSVDVFAEAVGQVAVAAGRDDTLPMLTGIRVEIEGSQVVLAATDRFRLAVRHIEWTPARPDIETAVLIPARTLSEAAKTLGASDAPVQLSLGTGAGSDGLLGIVNAGRRTTTRLLDAEFPKFRQLLPKEHTSVATLAVAALTEAIKRVALVAERGAQVRLEFSTEGLLLSAGGDDAGRAEEWLEADFRGEPLTIAFNPGYLVDGLSALHADRVTFGFTTPSRPAVLLPASEEEPQTLDSGAFAALTGNYTYLLMPVRLPG GT:EXON 1|1-386:0| BL:SWS:NREP 1 BL:SWS:REP 1->386|DPO3B_MYCSM|e-125|60.3|385/397| SEG 19->36|rslpsrppvpvlggvllv| SEG 131->143|vfaeavgqvavaa| SEG 259->268|vatlavaalt| SEG 292->303|glllsaggddag| BL:PDB:NREP 1 BL:PDB:REP 1->384|1mmiA|1e-25|27.9|355/366| RP:PDB:NREP 1 RP:PDB:REP 1->383|2awaD|2e-66|20.8|361/374| RP:PFM:NREP 3 RP:PFM:REP 1->118|PF00712|4e-11|32.2|118/119|DNA_pol3_beta| RP:PFM:REP 146->246|PF02767|1e-11|42.1|95/116|DNA_pol3_beta_2| RP:PFM:REP 250->383|PF02768|9e-17|37.8|119/121|DNA_pol3_beta_3| HM:PFM:NREP 3 HM:PFM:REP 1->118|PF00712|1.2e-38|37.3|118/120|DNA_pol3_beta| HM:PFM:REP 127->247|PF02767|4.7e-33|41.7|115/116|DNA_pol3_beta_2| HM:PFM:REP 249->359|PF02768|3.7e-34|38.7|111/121|DNA_pol3_beta_3| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF00712|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00712|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF00712|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF00712|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF00712|IPR001001| GO:PFM GO:0003677|"GO:DNA binding"|PF02767|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF02767|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF02767|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF02767|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF02767|IPR001001| GO:PFM GO:0003677|"GO:DNA binding"|PF02768|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF02768|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF02768|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF02768|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF02768|IPR001001| RP:SCP:NREP 3 RP:SCP:REP 1->119|1jqjA1|2e-24|27.7|119/122|d.131.1.1| RP:SCP:REP 144->248|1vpkA2|1e-20|22.7|97/123|d.131.1.1| RP:SCP:REP 249->384|1vpkA3|2e-23|23.1|121/123|d.131.1.1| HM:SCP:REP 1->119|1vpkA1|6.8e-26|31.9|119/0|d.131.1.1|1/3|DNA clamp| HM:SCP:REP 126->248|2polA2|4.8e-18|31.0|116/0|d.131.1.1|2/3|DNA clamp| HM:SCP:REP 249->384|2polA3|2.1e-28|39.7|121/0|d.131.1.1|1/1|DNA clamp| OP:NHOMO 844 OP:NHOMOORG 804 OP:PATTERN -------------------------------------------------------------------- 111-111111111111112-1111211111111111211112332111111111111111111121222221111111111111-1111111----1--11111111111111111111111111--11--11-1111111111111121111111111111-1111221-111111111111111111112112222222212222221111112221111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111-11111111-111111111--11-111111111111111111111111111111111-11111111111-111211111111111111111111111111111111111-1-11111111111--1111111111111--11-1211111111111111111111111111111111111111111111111112111111111111-1111111-1111--------------111111111--1-111------111111-1-------11111111111111111111111111111111111111--11111--11111111111111111111-1111111111111111111111111111111111111111111111111111-111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1-11---11111-11111111--------11------------------1--------1-1111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 383 STR:RPRED 99.2 SQ:SECSTR cEEEEEHHHHHHHHHHHHTTcccccccGGGGEEEEEEcccEEEEEEEcccEEEEEEEETTcGGGTEEEEEHHHHHHHHHHccccEEEEEETTTEEEEEETTEEEEEEcccGGGccccccccccccEEEHHHHHHHHHHHGGGccccTTcTGGGEEEEEETTTEEEEEEEcccEEEEEEEEcccccccEEEEEEEEHHHHHHHHHHccTTccEEEEEEcTccEEccEEEEEcccEEEEEEccccccccGGGcccccccEEEEEEHHHHHHHHHHHHHHTcTTccEEEEEETTEEEEEEEETTTEEEEEEccccEEEccEEEEEcHHHHHHHHHTccccEEEEEEccTTccEEEEEccccTEEEEETTEEEE#ccccEEEEccccc## DISOP:02AL 386-387| PSIPRED cEEEEEHHHHHHHHHHHHHHccccccccHHcEEEEEEEccEEEEEEEccEEEEEEEEEEEEccccEEEEEHHHHHHHHHHccccEEEEEEEccEEEEEEccEEEEEccccHHHccccccccccEEEEEHHHHHHHHHHHHHHHccccccEEEEEEEEEEEccEEEEEEEcccEEEEEEEEcccccccccEEEEEEcccHHHHHHHHcccccEEEEEEEccccccEEEEEEEccEEEEEEcccccccccHHcccccccEEEEEEHHHHHHHHHHHHHHHccccEEEEEEEccEEEEEEEccccEEEEEEEEEEEEcccEEEEEcHHHHHHHHHHccccEEEEEEccccccEEEEEccccccccccccccccccccEEEEEEEEEccc //