[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : fabD
DDBJ      :fabD         putative malonyl-CoA-ACP acyltransferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  779/915 : Eukaryota  73/199 : Viruses  0/175   --->[See Alignment]
c.19.1
:304 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->300 2qj3B PDBj 5e-84 58.0 %
:RPS:PDB   1->294 2cuyA PDBj 2e-43 29.6 %
:RPS:SCOP  1->258 1nm2A1  c.19.1.1 * 8e-37 28.9 %
:HMM:SCOP  1->305 1nm2A1 c.19.1.1 * 6.9e-56 37.7 %
:RPS:PFM   85->281 PF00698 * Acyl_transf_1 1e-14 32.8 %
:HMM:PFM   7->281 PF00698 * Acyl_transf_1 1.9e-30 25.2 270/318  
:BLT:SWISS 1->300 FABD_MYCTU 1e-83 58.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56461.1 GT:GENE fabD GT:PRODUCT putative malonyl-CoA-ACP acyltransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1767456..1768370 GB:FROM 1767456 GB:TO 1768370 GB:DIRECTION + GB:GENE fabD GB:PRODUCT putative malonyl-CoA-ACP acyltransferase GB:PROTEIN_ID BAD56461.1 LENGTH 304 SQ:AASEQ MIALFAPGQGSQTPGMLAPWLELPGANDRLALWSKAAGLDLARLGTTATAEEIVDTAVTQPLVVAAALLAYAEIGQDALPADTIVAGHSVGEFAAAAVAGVITPDEAVTLAAIRGAEMAKACALEPTGMSAVLGGDEAAVLARLSELDLVPANRNAVGQIVAAGRLDALAELAANPPEKARVRALPVAGAFHTAFMAPAQDAVAKAIAQITPGEPTRTLLSNYDGKPVSSGRDAIEKLAAQVTRPVRWDLCTETVRQAGVAGVAELPPAGTLVGIAKRELKGTPNLALKTPDDLPALAALGTSG GT:EXON 1|1-304:0| BL:SWS:NREP 1 BL:SWS:REP 1->300|FABD_MYCTU|1e-83|58.0|300/302| SEG 57->72|avtqplvvaaallaya| SEG 94->99|aaaava| BL:PDB:NREP 1 BL:PDB:REP 1->300|2qj3B|5e-84|58.0|300/320| RP:PDB:NREP 1 RP:PDB:REP 1->294|2cuyA|2e-43|29.6|294/305| RP:PFM:NREP 1 RP:PFM:REP 85->281|PF00698|1e-14|32.8|195/297|Acyl_transf_1| HM:PFM:NREP 1 HM:PFM:REP 7->281|PF00698|1.9e-30|25.2|270/318|Acyl_transf_1| RP:SCP:NREP 1 RP:SCP:REP 1->258|1nm2A1|8e-37|28.9|239/243|c.19.1.1| HM:SCP:REP 1->305|1nm2A1|6.9e-56|37.7|244/254|c.19.1.1|1/1|FabD/lysophospholipase-like| OP:NHOMO 1120 OP:NHOMOORG 852 OP:PATTERN -------------------------------------------------------------------- 12314-----1---34334-421151333334211111121533111111111111121143118249141--------111111111111111111--11111131111111111111111111111111111111112211122232111211--111111211444621111111111111111111-115111111111111111111113111111211111111131111111111111111111111--1111--1-11--111--11111111111111111111111111111111111111111111111111-11121111111-1-31221111111--111111111111111111--11123---111111123111-21111-11111111111-1121221-12111224-111-111-11--211111111-1111111112211111111111111111111111111111111111111-11----11121132222112133331211111111111211111211222211-111-111111111111-1131-11131111111111211213111184-1-111--1-------------11111--111-121111122222112111221222221-11111------21121211111111111-1111111111111111111212112211211111111111111111111111-122222222222-1111111111111121111111111111111122222111-121-1--11221111222321111111111111211111112112222222111111111-1--------------1-1-------------------------1111111111-11 -1------1----11---------1-------------------------------------11----------1-------------------------1--111--4--11111-1---1--11-1-121-1-1--1-1-111--11-1--1-11111111-21-111411-21-11D222221132-2111--1-3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 300 STR:RPRED 98.7 SQ:SECSTR ccEEEEccTTcccTTTTHHHHHHcHHHHHHHHHHHHHcTTHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHHHHHHTTcccccEEEEcTHHHHHHHHHTTcccHHHHHHHHHHHHHHHHTTccTTcEEEEEEEcccHHHHHHHHTTcccEEEEEEETTEEEEEEEHHHHHHHHHHHHHTcEEEEcccccccccGGGHHHHHHHHHHHTTcccccccccEEcTTTccEEccHHHHHHHHHHGGGccccHHHHHHHHHHTTccEEEEEccccHHHHHHHHHccccEEEEEccHHHHHHHHHH#### PSIPRED cEEEEEccccccHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHcccccEEEEEEcccccEEEEccHHHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHHHHHHccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHcccccEEcccHHHHHHHHHHHccc //