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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadA
DDBJ      :fadA         putative acyl-CoA thiolase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  628/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
c.95.1
:404 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   12->404 1wdkC PDBj 3e-68 42.3 %
:RPS:PDB   6->404 1dluA PDBj 1e-62 40.4 %
:RPS:SCOP  4->277 1afwA1  c.95.1.1 * 7e-60 33.1 %
:RPS:SCOP  262->402 1bi5A2  c.95.1.2 * 6e-28 14.0 %
:HMM:SCOP  4->281 1ulqA1 c.95.1.1 * 2e-63 47.4 %
:HMM:SCOP  282->404 1ulqA2 c.95.1.1 * 5.5e-45 53.7 %
:RPS:PFM   4->273 PF00108 * Thiolase_N 3e-38 50.0 %
:RPS:PFM   281->402 PF02803 * Thiolase_C 3e-31 60.7 %
:HMM:PFM   4->228 PF00108 * Thiolase_N 1.5e-53 41.2 221/264  
:HMM:PFM   282->403 PF02803 * Thiolase_C 1.7e-49 54.9 122/123  
:BLT:SWISS 4->404 PAAJ_ECOLI 4e-86 48.9 %
:PROS 89->107|PS00098|THIOLASE_1
:PROS 385->398|PS00099|THIOLASE_3
:PROS 350->366|PS00737|THIOLASE_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55127.1 GT:GENE fadA GT:PRODUCT putative acyl-CoA thiolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 295650..296864 GB:FROM 295650 GB:TO 296864 GB:DIRECTION + GB:GENE fadA GB:PRODUCT putative acyl-CoA thiolase GB:PROTEIN_ID BAD55127.1 LENGTH 404 SQ:AASEQ MTTEAYIYEAIRTPRGRGKKNGSLHSVKPIDLTVGLIQELRSRFPNLDEDRISDVILGVVAPVGDQGADIARTAVTVAGLPDTVGGFQLNRFCASGLEAVNLAAQKVRSGFDDLVIAGGVESMSRVPMGSDGGAWALDPATNYDTYFVPQGVSADLIATIEGFSREDVDAYAVRSQELAAKATTGGYFAKSIVPVKDQNGLVVLDRDEHMRPGTTLEDLAKLQPSFAMIGEMGGFDAVALQKYHFVEKINHVHHGGNSSGIVDGAALVLVGSEEAGKASGLTPRARVVATATSGADSTIMLTGPTPAAKKVLAKAGLTLDDIDLVEINEAFASVVLKFQKDLNIPDEKLNVNGGAIAMGHPLGATGAMITGTMVDELERRNGRYALITLCIGGGMGVATIIERV GT:EXON 1|1-404:0| BL:SWS:NREP 1 BL:SWS:REP 4->404|PAAJ_ECOLI|4e-86|48.9|376/401| PROS 89->107|PS00098|THIOLASE_1|PDOC00092| PROS 385->398|PS00099|THIOLASE_3|PDOC00092| PROS 350->366|PS00737|THIOLASE_2|PDOC00092| BL:PDB:NREP 1 BL:PDB:REP 12->404|1wdkC|3e-68|42.3|366/390| RP:PDB:NREP 1 RP:PDB:REP 6->404|1dluA|1e-62|40.4|374/389| RP:PFM:NREP 2 RP:PFM:REP 4->273|PF00108|3e-38|50.0|244/261|Thiolase_N| RP:PFM:REP 281->402|PF02803|3e-31|60.7|122/131|Thiolase_C| HM:PFM:NREP 2 HM:PFM:REP 4->228|PF00108|1.5e-53|41.2|221/264|Thiolase_N| HM:PFM:REP 282->403|PF02803|1.7e-49|54.9|122/123|Thiolase_C| GO:PFM:NREP 4 GO:PFM GO:0008152|"GO:metabolic process"|PF00108|IPR002155| GO:PFM GO:0016747|"GO:transferase activity, transferring acyl groups other than amino-acyl groups"|PF00108|IPR002155| GO:PFM GO:0008152|"GO:metabolic process"|PF02803|IPR002155| GO:PFM GO:0016747|"GO:transferase activity, transferring acyl groups other than amino-acyl groups"|PF02803|IPR002155| RP:SCP:NREP 2 RP:SCP:REP 4->277|1afwA1|7e-60|33.1|248/266|c.95.1.1| RP:SCP:REP 262->402|1bi5A2|6e-28|14.0|136/154|c.95.1.2| HM:SCP:REP 4->281|1ulqA1|2e-63|47.4|253/0|c.95.1.1|1/1|Thiolase-like| HM:SCP:REP 282->404|1ulqA2|5.5e-45|53.7|123/0|c.95.1.1|1/1|Thiolase-like| OP:NHOMO 3725 OP:NHOMOORG 849 OP:PATTERN 11-1--1222222221-12222133111--13-----------------------------2221--- 233473-41123339GE66-6C33BC666669DDDDCORU294F23342111777346--89A-769A987-----------7----------------3-333232232--------------------------33344---311-12--1-----------1------------------75544---533444444443445444352233444464463111111172-333333333333333222311111111111--11111--1-122111-3222--------------3333333333333-11---1112-13221111111111-3332111-1-1-5-12-872516-151--1-11-5--C888-----32A782337986634444444435-22522824438-444354555655583635675555467--------511-1446------------1111-11--1--1----159F8-4A95A888AA867888889A888878I9FBEF921896966BBA98CC7225----44-------221B764C46-----------534-7-2--44445513-----------1-1111111-------33-462534633333334733334353354---3411------43421345334544555-355444454434444544678733332333333333333333373323334--222222222222---3222223333-7536-------11-11-1-999896A56481AA9A7A79A97996666111111111-222433333553443344444445------2233233311111111--1-------------------------11111-1------ ----334-32-15655566766666675657664445565355676555557786755565532422214223242212224444411-56454443433545A561544A8B53865444555AE4E3Ci5-8685554445544535563485695B35648545446745643251J1114244966854475744 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 404 STR:RPRED 100.0 SQ:SECSTR cTTTEEEEEEEEcccEETTTTcTTTTccHHHHHHHHHHHHHHHHTTccGGGccEEEEEccccTTcccHcHHHHHHHHTTccTTcEEEEEccGGGHHHHHHHHHHHHHHTTcccEEEEEEEEEcTTccEEccccccccccccccEEHHHcHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHTTTTTTTcccEccccccEEEcccTTccTTccHHHHHTccccccTTcTHHHHHHHHHHHccccccTTcccccccccccEEEEEEEEEEEHHHHHHHTccccEEEEEEEEEEccGGGGGGTHHHHHHHHHHHHTccGGGccEEEEccccHHHHHHHHHHHcccGGGccTTccHHHHcccTTTHHHHHHHHHHHHHHHHTccEEEEEEEETTTEEEEEEEEcc PSIPRED ccccEEEEEEEccccEEcccccccccccHHHHHHHHHHHHHHHcccccHHHccEEEEEEEEcccccccHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccccccccccHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHccccEEccccEEEEEEcccccccccHHHHHccccccccccccccccHHHHHHccccccccccccccccccccccEEEEEEEcHHHHHHcccccEEEEEEEEEEEEcHHHcccHHHHHHHHHHHHccccHHHEEEEEEEcHHHHHHHHHHHHccccHHHccccccHHHccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcc //