[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : fadA4
DDBJ      :fadA4        putative acyl-CoA thiolase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  629/915 : Eukaryota  193/199 : Viruses  0/175   --->[See Alignment]
c.95.1
:392 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   5->368 1wl4A PDBj 4e-70 44.9 %
:RPS:PDB   5->369 1dluA PDBj 1e-60 44.4 %
:RPS:SCOP  5->253 1afwA1  c.95.1.1 * 2e-56 34.0 %
:RPS:SCOP  268->369 1afwA2  c.95.1.1 * 9e-16 42.2 %
:HMM:SCOP  3->270 1ulqA1 c.95.1.1 * 3.5e-86 52.1 %
:HMM:SCOP  268->393 1afwA2 c.95.1.1 * 7.5e-36 50.0 %
:RPS:PFM   5->253 PF00108 * Thiolase_N 5e-54 55.9 %
:RPS:PFM   293->369 PF02803 * Thiolase_C 2e-14 58.4 %
:HMM:PFM   1->262 PF00108 * Thiolase_N 3.2e-107 56.5 262/264  
:HMM:PFM   271->391 PF02803 * Thiolase_C 1.8e-44 53.7 121/123  
:BLT:SWISS 1->369 THIL_MYCLE e-135 66.1 %
:PROS 84->102|PS00098|THIOLASE_1
:PROS 374->387|PS00099|THIOLASE_3
:PROS 339->355|PS00737|THIOLASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55920.1 GT:GENE fadA4 GT:PRODUCT putative acyl-CoA thiolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1188832..1190010 GB:FROM 1188832 GB:TO 1190010 GB:DIRECTION + GB:GENE fadA4 GB:PRODUCT putative acyl-CoA thiolase GB:PROTEIN_ID BAD55920.1 LENGTH 392 SQ:AASEQ MTTSVIVSGARTPVGRLLGGLKDFSGSDLGGFAIKAALEKGGVAPEQVEYVIMGQVLTAGAGQIPARQAAVAAGIPMDVPALTLNKVCLSGINAIALADQLIRAGEHEIVVAGGQESMSQAPHLLEKSREGFKYGDVTLRDHMAYDGLHDIFTDQAMGLLTEQGNDRQPISREDQDAFAAASHQRAAAAWKNGVFDDEVVPVAVPQRKGDPVLVTTDEGIRADTTVESLAKLRPAFREDGTITAGSASQISDGAAAVVVMSKAKAQALGLSWIAEIGAAGVVAGPDSTLQDQPANAIAKACAKQGISPADLDLVEINEAFAAVGIASTRKLGIDPAKVNVNGGAIAIGHPLGMSGARILLHLALELKRRGGGIGAAALCGGGGQGDALIVKV GT:EXON 1|1-392:0| BL:SWS:NREP 1 BL:SWS:REP 1->369|THIL_MYCLE|e-135|66.1|369/393| PROS 84->102|PS00098|THIOLASE_1|PDOC00092| PROS 374->387|PS00099|THIOLASE_3|PDOC00092| PROS 339->355|PS00737|THIOLASE_2|PDOC00092| SEG 177->189|afaaashqraaaa| SEG 254->267|aaavvvmskakaqa| SEG 277->284|gaagvvag| SEG 370->387|gggigaaalcggggqgda| BL:PDB:NREP 1 BL:PDB:REP 5->368|1wl4A|4e-70|44.9|361/393| RP:PDB:NREP 1 RP:PDB:REP 5->369|1dluA|1e-60|44.4|363/389| RP:PFM:NREP 2 RP:PFM:REP 5->253|PF00108|5e-54|55.9|247/261|Thiolase_N| RP:PFM:REP 293->369|PF02803|2e-14|58.4|77/131|Thiolase_C| HM:PFM:NREP 2 HM:PFM:REP 1->262|PF00108|3.2e-107|56.5|262/264|Thiolase_N| HM:PFM:REP 271->391|PF02803|1.8e-44|53.7|121/123|Thiolase_C| GO:PFM:NREP 4 GO:PFM GO:0008152|"GO:metabolic process"|PF00108|IPR002155| GO:PFM GO:0016747|"GO:transferase activity, transferring acyl groups other than amino-acyl groups"|PF00108|IPR002155| GO:PFM GO:0008152|"GO:metabolic process"|PF02803|IPR002155| GO:PFM GO:0016747|"GO:transferase activity, transferring acyl groups other than amino-acyl groups"|PF02803|IPR002155| RP:SCP:NREP 2 RP:SCP:REP 5->253|1afwA1|2e-56|34.0|235/266|c.95.1.1| RP:SCP:REP 268->369|1afwA2|9e-16|42.2|102/124|c.95.1.1| HM:SCP:REP 3->270|1ulqA1|3.5e-86|52.1|267/0|c.95.1.1|1/1|Thiolase-like| HM:SCP:REP 268->393|1afwA2|7.5e-36|50.0|124/124|c.95.1.1|1/1|Thiolase-like| OP:NHOMO 3712 OP:NHOMOORG 852 OP:PATTERN 11-1--1222222221-12222133111--13-----------------------------2221--- 233473-41123229GE66-6B33BC666669CCCCCOQU294F22341111767345--89A-7699987-----------7----------------3-333232232--------------------------33344---311-12--1-----------1------------------75544---533444444443445444352233444464463111111172-333333333333333222311111111111--11111--1-1221---2111--------------2222222222222-11---1112-13221111111111-3332111-1-1-5-12-762516-151--1-11-5--C888-----32A782337986634444444435-22522824438-444354555655583635575555467--------511-1446------------1111-21--1--1----159F6-4A95A888AA867887889A888878I9FBEF921796966BBA98CC7225----44-------221A764C46-----------524-7-2--44445513-----------1-1111111-------33-462534633333334733334353354---3411------43421345334544555-355444454434444544678733332333333333333333373323334--222222222222---3222223333-7536111----11-11-1-999896956481AA9A7979A97996666111111111-222433333553443344444445------2233233311111111--1-------------------------11111-1------ 11--334-42-15655566766666675657664445565355666555557796755565532422214223242212224444411-56454443433545A561544A9B54884555655AE4F3Hq5-B695554445545536454484695A35648544446645643261J1114244976854475644 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 369 STR:RPRED 94.1 SQ:SECSTR TTTEEEEEEEEcccEETTcTTTTccHHHHHHHHHHHHHHHHTccGGGccEEEEEccccTTccccHHHHHHHHTTccTTcEEEEEccGGGHHHHHHHHHHHHHHTTcccEEEEEEEEEcTTccEEcccccccccccccccEEHHHHHHTccTTTcccHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHTTTTTTTcccEEEccccccTEEEcccTTccTTccHHHHHTccccccTTcccccccccccEEEEEEEEEEEHHHHHHHTccccEEEEEEEEEEccGGGGGGTHHHHHHHHHHHHTccGGGccEEEEccccHHHHHHHHHHHcccGGGccTTccHHHHcccTTTHHHHHHHHHHHHHHHH####################### PSIPRED ccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccHHHccEEEEEEEcccccccHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEEEEEccccccccccHHHHHcccccccccccEEEccccccccHHEEEEEEcHHHHHHcccccEEEEEEEEEEEccHHHccccHHHHHHHHHHHHcccHHHccEEEEEccHHHHHHHHHHHccccHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEc //