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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadA5
DDBJ      :fadA5        putative acyl-CoA thiolase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  625/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
c.95.1
:407 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->405 1ulqC PDBj 1e-96 51.9 %
:RPS:PDB   5->405 1dluA PDBj 9e-53 39.5 %
:RPS:SCOP  4->266 1afwA1  c.95.1.1 * 2e-41 32.8 %
:RPS:SCOP  286->403 1tvzA2  c.95.1.2 * 4e-18 8.5 %
:HMM:SCOP  4->284 1ulqA1 c.95.1.1 * 2.1e-77 48.0 %
:HMM:SCOP  285->407 1ulqA2 c.95.1.1 * 1.8e-39 55.3 %
:RPS:PFM   4->266 PF00108 * Thiolase_N 2e-37 52.7 %
:RPS:PFM   288->406 PF02803 * Thiolase_C 6e-24 58.0 %
:HMM:PFM   2->274 PF00108 * Thiolase_N 3.3e-81 49.4 253/264  
:HMM:PFM   285->405 PF02803 * Thiolase_C 2.2e-47 54.5 121/123  
:BLT:SWISS 2->405 PAAJ_ECOLI 6e-96 50.6 %
:PROS 86->104|PS00098|THIOLASE_1
:PROS 388->401|PS00099|THIOLASE_3
:PROS 353->369|PS00737|THIOLASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57003.1 GT:GENE fadA5 GT:PRODUCT putative acyl-CoA thiolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2328707..2329930 GB:FROM 2328707 GB:TO 2329930 GB:DIRECTION + GB:GENE fadA5 GB:PRODUCT putative acyl-CoA thiolase GB:PROTEIN_ID BAD57003.1 LENGTH 407 SQ:AASEQ MMGEVFLVDGARTPQGRYGGALASVRPDDLAATVVAEAVRRAGVPADAVDEVVLGAANQAGEDNRNVARMAVLLAGLPDAVPGYTVNRLCASGLTAVATAANAIRGGEADIVVAGGVESMTRAPWVMAKPGTPWARPGEVADTALGWRFTNPAFTAADRAVPTDAGPRARKITLSMGETAEEVAALEGISRAESDAFALRSQQRAAAAVAAGRFRREIVAVRAGNTLVETDEVPRPDTTAEKLAALRPVFRPDGIVTAGSSSPLSDGAAALVLAGAEAVRRHGLTVRARIVASASAGVAPNVMGLGPVPATRKTLDRAGWSQADLGAVELNEAFAAQSLGVIRQLKLDEEIVNADGGAIALGHPLGCSGARILLTLVGRMEREGVRRGLATLCVGVGQGVAMAIEAA GT:EXON 1|1-407:0| BL:SWS:NREP 1 BL:SWS:REP 2->405|PAAJ_ECOLI|6e-96|50.6|391/401| PROS 86->104|PS00098|THIOLASE_1|PDOC00092| PROS 388->401|PS00099|THIOLASE_3|PDOC00092| PROS 353->369|PS00737|THIOLASE_2|PDOC00092| SEG 31->46|aatvvaeavrragvpa| SEG 196->216|afalrsqqraaaavaagrfrr| SEG 267->281|gaaalvlagaeavrr| SEG 377->388|vgrmeregvrrg| BL:PDB:NREP 1 BL:PDB:REP 4->405|1ulqC|1e-96|51.9|389/399| RP:PDB:NREP 1 RP:PDB:REP 5->405|1dluA|9e-53|39.5|382/389| RP:PFM:NREP 2 RP:PFM:REP 4->266|PF00108|2e-37|52.7|239/261|Thiolase_N| RP:PFM:REP 288->406|PF02803|6e-24|58.0|119/131|Thiolase_C| HM:PFM:NREP 2 HM:PFM:REP 2->274|PF00108|3.3e-81|49.4|253/264|Thiolase_N| HM:PFM:REP 285->405|PF02803|2.2e-47|54.5|121/123|Thiolase_C| GO:PFM:NREP 4 GO:PFM GO:0008152|"GO:metabolic process"|PF00108|IPR002155| GO:PFM GO:0016747|"GO:transferase activity, transferring acyl groups other than amino-acyl groups"|PF00108|IPR002155| GO:PFM GO:0008152|"GO:metabolic process"|PF02803|IPR002155| GO:PFM GO:0016747|"GO:transferase activity, transferring acyl groups other than amino-acyl groups"|PF02803|IPR002155| RP:SCP:NREP 2 RP:SCP:REP 4->266|1afwA1|2e-41|32.8|235/266|c.95.1.1| RP:SCP:REP 286->403|1tvzA2|4e-18|8.5|118/221|c.95.1.2| HM:SCP:REP 4->284|1ulqA1|2.1e-77|48.0|269/0|c.95.1.1|1/1|Thiolase-like| HM:SCP:REP 285->407|1ulqA2|1.8e-39|55.3|123/0|c.95.1.1|1/1|Thiolase-like| OP:NHOMO 3686 OP:NHOMOORG 845 OP:PATTERN 11-1--1222222221-12222133111--13-----------------------------2221--- 233473-41123339GE66-6C33BC666669DDDDCOQU294F23342111767346--89A-769A987-----------7----------------3-333232232--------------------------33344---311-12--1-----------1------------------75544---533444444443445444352233444464463111111172-333333333333333222311111111111--11111--1-1221---2111--------------2222222222222-11---1112-13221111111111-3332111-1-1-5-12-652516-151--1-11-5--C888-----32A782337986634444444435-22522824437-444354555655583635575555467--------511-1446------------1111-11--1--1----159F7-4A95A888AA867888889A888878H9FBEF921896966BBB98CC7225----44-------221A764C46-----------524-7-2--44445513-----------1-1111111-------33-462534633333334733334353354---3411------43421345334544555-355444454434444544678733332333333333333333373323334--222222222222---3222223333-7536-------11-1--1-999896A56481AA9A7A79A97996666111111111-222433333553443344444445------2222233311111111--1-------------------------11111-1------ ----334-42--5655566766666675657564445565355666555557786755565532422214223242212224444411-56454443333545A561544A8B53874554555AE4B3Dk5-8684553435544535554485695B35647544446735643261J1114244966854475744 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 407 STR:RPRED 100.0 SQ:SECSTR cTTTEEEEEEEEcccEETTcTTTTccHHHHHHHHHHHHHHHHTccGGGccEEEEEccccTTccccHHHHHHHHHTTccTTcEEEEEccGGGHHHHHHHHHHHHHHTTcccEEEEEEEEEcTTccEEccccccccccccccEEHHHHHHTccTTHHHHHHHHHHHHHHHHHHTcccHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHTTTTTTTccccccccEEEcccTTccTTccHHHHHTccccccTTcccccccccccEEEEEEEEEEEHHHHHHHTccccEEEEEEEEEEccGGGGGGTHHHHHHHHHHHHTccGGGccEEEEccccHHHHHHHHHHHcccGGGccTTccHHHHcccTTTHHHHHHHHHHHHHHHHTccEEEEEEEETTTEEEEEEEEEc PSIPRED ccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccHHHccEEEEEEEccccccccHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccHHHHHccccccccccEEEccccccccccEEEEEEEcHHHHHHcccccEEEEEEEEEEEccHHHccccHHHHHHHHHHHHcccHHHEEEEEEcccHHHHHHHHHHHccccHHHccccccHHHccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccHHEEEEEcc //