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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadB
DDBJ      :fadB         putative 3-hydroxyacyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  542/915 : Eukaryota  162/199 : Viruses  0/175   --->[See Alignment]
a.100.1c.14.1c.2.1
:716 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->716 1wdkB PDBj 6e-72 31.6 %
:RPS:PDB   9->300 1dciA PDBj 2e-26 16.1 %
:RPS:PDB   354->606 1e9yA PDBj 9e-30 12.8 %
:RPS:PDB   635->712 3ctvA PDBj 3e-04 25.4 %
:RPS:SCOP  1->316 1wdkA4  c.14.1.3 * 2e-37 23.2 %
:RPS:SCOP  345->488 1dliA2  c.2.1.6 * 4e-18 11.5 %
:RPS:SCOP  504->624 1wdkA1  a.100.1.3 * 7e-22 17.4 %
:RPS:SCOP  629->716 1wdkA2  a.100.1.3 * 2e-14 40.0 %
:HMM:SCOP  1->316 1wdkA4 c.14.1.3 * 6.4e-63 35.3 %
:HMM:SCOP  318->503 1f0yA2 c.2.1.6 * 1.2e-61 50.0 %
:HMM:SCOP  503->648 1wdkA1 a.100.1.3 * 8.7e-21 31.1 %
:HMM:SCOP  629->715 1wdkA2 a.100.1.3 * 6.4e-13 29.8 %
:RPS:PFM   19->192 PF00378 * ECH 2e-19 37.3 %
:RPS:PFM   336->502 PF02737 * 3HCDH_N 2e-34 48.5 %
:RPS:PFM   504->604 PF00725 * 3HCDH 4e-08 35.1 %
:RPS:PFM   576->694 PF06134 * RhaA 9e-05 29.6 %
:HMM:PFM   323->501 PF02737 * 3HCDH_N 9.4e-65 50.3 179/180  
:HMM:PFM   18->192 PF00378 * ECH 2.3e-41 45.2 168/170  
:HMM:PFM   504->605 PF00725 * 3HCDH 4.3e-20 34.7 95/97  
:BLT:SWISS 15->716 FADB_PSEMY 3e-76 30.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55128.1 GT:GENE fadB GT:PRODUCT putative 3-hydroxyacyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 296904..299054 GB:FROM 296904 GB:TO 299054 GB:DIRECTION + GB:GENE fadB GB:PRODUCT putative 3-hydroxyacyl-CoA dehydrogenase GB:PROTEIN_ID BAD55128.1 LENGTH 716 SQ:AASEQ MSETNMIGWEKDSDGIVVLTMDDPNQGANTMNELYKKSMTATVDRLEAEKDDITGVVLTSAKKTFFAGGDLKNMMKVGPDDAQALMAELTEIKSALRRLEQLGKPVVAAINGAALGGGLEIALATHHRIAADVPGSQIGLPEVTLGLLPAGGGIIRTVRMLGLQNALMQVLLQGQRNKPAKAKEIGLVDELVGSIEELVPAAKAWIKANPDAGVQPWDKKGFKIPGGTPASPGFAANLPAFPANLRKQLKGANMPAPRAIMAAAVEGSQVDIDNASLIESRYFVHLLTGPVAKNMIQAFFFDLQAINNGGSRPKDVPKREIKKVGVLGAGMMGAGIAYVSAKAGYEVVLKDVSLEAAERGKGYSEKIEAKALSRGKTTEEKSKALLDRIKPTADAADFAGVDFVIEAVFENTELKHKVFQEIEDIVTPDALLGSNTSTLPITGLATGVKRQEDFIGIHFFSPVDKMPLVEIIKGEKTSDEALARVYDYTLAIKKTPIVVNDSRGFFTSRVIGTFVNEAIAMLGEGIEPATIEQAGSQAGYPAPPLQLSDELNMKLMLKIAKETEEAIKAGDTKLGTERHPAIDVIEWMVGEGRPGRLEKAGFYEYDENGKRLGLWQGLREHFKTTAGFDVPLQDLIDRMLFAEAIETQKCFDEGVLETTADANIGSIFGIGFPAWTGGVHQFIVGYPGGQEAFVARADELAEKYGQRFQVPASLRK GT:EXON 1|1-716:0| BL:SWS:NREP 1 BL:SWS:REP 15->716|FADB_PSEMY|3e-76|30.5|682/715| SEG 108->124|aaingaalgggleiala| SEG 322->335|kkvgvlgagmmgag| SEG 393->404|adaadfagvdfv| BL:PDB:NREP 1 BL:PDB:REP 15->716|1wdkB|6e-72|31.6|681/711| RP:PDB:NREP 3 RP:PDB:REP 9->300|1dciA|2e-26|16.1|248/275| RP:PDB:REP 354->606|1e9yA|9e-30|12.8|227/238| RP:PDB:REP 635->712|3ctvA|3e-04|25.4|71/90| RP:PFM:NREP 4 RP:PFM:REP 19->192|PF00378|2e-19|37.3|166/170|ECH| RP:PFM:REP 336->502|PF02737|2e-34|48.5|167/180|3HCDH_N| RP:PFM:REP 504->604|PF00725|4e-08|35.1|94/97|3HCDH| RP:PFM:REP 576->694|PF06134|9e-05|29.6|108/415|RhaA| HM:PFM:NREP 3 HM:PFM:REP 323->501|PF02737|9.4e-65|50.3|179/180|3HCDH_N| HM:PFM:REP 18->192|PF00378|2.3e-41|45.2|168/170|ECH| HM:PFM:REP 504->605|PF00725|4.3e-20|34.7|95/97|3HCDH| GO:PFM:NREP 9 GO:PFM GO:0003824|"GO:catalytic activity"|PF00378|IPR001753| GO:PFM GO:0008152|"GO:metabolic process"|PF00378|IPR001753| GO:PFM GO:0006631|"GO:fatty acid metabolic process"|PF02737|IPR006176| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02737|IPR006176| GO:PFM GO:0006631|"GO:fatty acid metabolic process"|PF00725|IPR006108| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00725|IPR006108| GO:PFM GO:0008740|"GO:L-rhamnose isomerase activity"|PF06134|IPR009308| GO:PFM GO:0019299|"GO:rhamnose metabolic process"|PF06134|IPR009308| GO:PFM GO:0030145|"GO:manganese ion binding"|PF06134|IPR009308| RP:SCP:NREP 4 RP:SCP:REP 1->316|1wdkA4|2e-37|23.2|306/310|c.14.1.3| RP:SCP:REP 345->488|1dliA2|4e-18|11.5|139/196|c.2.1.6| RP:SCP:REP 504->624|1wdkA1|7e-22|17.4|115/117|a.100.1.3| RP:SCP:REP 629->716|1wdkA2|2e-14|40.0|85/95|a.100.1.3| HM:SCP:REP 1->316|1wdkA4|6.4e-63|35.3|309/0|c.14.1.3|1/1|ClpP/crotonase| HM:SCP:REP 318->503|1f0yA2|1.2e-61|50.0|186/0|c.2.1.6|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 503->648|1wdkA1|8.7e-21|31.1|122/125|a.100.1.3|1/2|6-phosphogluconate dehydrogenase C-terminal domain-like| HM:SCP:REP 629->715|1wdkA2|6.4e-13|29.8|84/95|a.100.1.3|2/2|6-phosphogluconate dehydrogenase C-terminal domain-like| OP:NHOMO 2221 OP:NHOMOORG 737 OP:PATTERN 11-1--5766766545-121121B52231-24-----------------------------2331-22 2423A1-4--122273333-322238333333332357AD255522231311323534--458-7569883-----11-1--5---------1-11---4-323353333--------------------------21122---2-1--1-------------------1-------------23322---332555553454536333243322662444221-------73-111111111111112---1-------1-----11---1-------1111---------------------------------------2-1232111112212212222222-2-213-11-442527-16---1--1-4-16333-----336653224333445564454554-22522523654-533223432244672223373343236--------3---1342------------------1--1--1----12292-3862765456633444556544454696D598723553455555445841-2----12--------1-9542D54-----------46426-11-34435512---------------------------22-321224322222222222223222223---22--------3222-223223333243-233322242322222322344422322222222222222222261222222--222222222222---2111112222-2512111--------1---44434233326-55543642443464111111111111-222222222222222211111111------11--------------1---------------------------------------- ----115-84--2223221111111112221111211222222111-1111221111112221--------------------------11121113222222222-56496533443333354332538O3-5553232333522333133253453647929332415-8B622211H1112245851333343234 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 716 STR:RPRED 100.0 SQ:SECSTR ccccEEEEEEEEETTEEEEEEccGGGTTTcccHHHHHHHHHHHHHHHTcTTTccEEEEEEcTTcccccccHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHccccEEEEEccEEETHHHHHHTTccEEEEETcTTcEEEccGGGGTccccccHHHHGGGTcccHHHHHHHHHHccEEEHHHHHHHTcccEEEccHHHHHHHHHHHHTTccHHHHHTGGGHHHHHHTTcccHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHTccHHHHHHHHHHHTcccHHHHHHcccccccccGccEEEEcccHHHHHHHHHHHTTcTTEEEEEEccccHHHHHHHHHHHHHHHHHHTcccccHHHHHHHHcEEEccHHHHHTTHHHHHHHHHHTcccHHHHHHHGGGcccTTTccTTHHHHccEEEEEEEETTEEEEEEEEcccccccccTTccccccccTTTTccccEEEEEEcccccEEEETTccGGccTTEEccGGGGTTEEEcccHHHHHHHTTcEEEEcTTcEEEEEEEEccTTcEEccTTcGHHHHccccEEccHHHHHHHHHHHHHHTcTTccccccccccccTTTccccccHHHHHHTcGGGTTccccEEEETTEEEEcccccTTTTTTTTTHHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHTcccccTTccccTTGGGcccGGGGTcc DISOP:02AL 371-383| PSIPRED ccccEEEEEEEEcccEEEEEEEcccHHcccccHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHccHHEEccccccEEEccHHHHcccccccHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHccHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHccccccEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccEEcccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcc //