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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE1
DDBJ      :fadE1        putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  509/915 : Eukaryota  175/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:393 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   20->393 2wbiA PDBj 6e-49 33.6 %
:RPS:PDB   6->389 3d9dB PDBj 4e-63 19.7 %
:RPS:SCOP  5->243 1siqA2  e.6.1.1 * 5e-31 21.3 %
:RPS:SCOP  243->393 1bucA1  a.29.3.1 * 4e-33 29.8 %
:HMM:SCOP  4->243 1jqiA2 e.6.1.1 * 2.6e-52 32.5 %
:HMM:SCOP  241->394 2c12A1 a.29.3.1 * 2.8e-47 37.0 %
:RPS:PFM   16->128 PF02771 * Acyl-CoA_dh_N 2e-08 35.5 %
:RPS:PFM   134->183 PF02770 * Acyl-CoA_dh_M 9e-11 55.1 %
:RPS:PFM   243->392 PF00441 * Acyl-CoA_dh_1 5e-20 34.7 %
:HMM:PFM   247->392 PF00441 * Acyl-CoA_dh_1 1.3e-40 34.2 146/150  
:HMM:PFM   134->184 PF02770 * Acyl-CoA_dh_M 7.9e-20 46.0 50/52  
:HMM:PFM   15->128 PF02771 * Acyl-CoA_dh_N 8e-15 25.0 108/113  
:BLT:SWISS 20->393 ACD10_HUMAN 8e-53 35.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55284.1 GT:GENE fadE1 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(455999..457180) GB:FROM 455999 GB:TO 457180 GB:DIRECTION - GB:GENE fadE1 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD55284.1 LENGTH 393 SQ:AASEQ MVATVIDFSIPADLAAERDRVRRFVIDKIVPFERDPRLTAHGPTDELRQELVELARAEKLLTVQAPEEFGGRGLSHVEQAVIYEAAGWSTLGPVAMNCAAPDEGNMYLLGKIADRDQIDRYLMPVINGHQRSVFAMTEPEGAGSDPGQLSTEAVFDGENFVVNGRKWLITGADGAKTWIIMARLAPNPHLPEGPTLFLTDGDQPGIVIERTMNTMDRNYVAGHGVVRFDNLTLPRSALLGEAGQALRYAQLRLAPARLTHCMRWLGAAERAQSIAVQHARTRTAFGKTIGEHQGVSFMLADNEIALHQCRLTIWHACWLMDQGEKARHESSMAKSYVSEELFKVADRCVQVLGGIGISDETVVEMIFRDMRAFRLYDGPTEVHKYAIGRKILR GT:EXON 1|1-393:0| BL:SWS:NREP 1 BL:SWS:REP 20->393|ACD10_HUMAN|8e-53|35.5|372/1059| BL:PDB:NREP 1 BL:PDB:REP 20->393|2wbiA|6e-49|33.6|369/394| RP:PDB:NREP 1 RP:PDB:REP 6->389|3d9dB|4e-63|19.7|381/431| RP:PFM:NREP 3 RP:PFM:REP 16->128|PF02771|2e-08|35.5|107/113|Acyl-CoA_dh_N| RP:PFM:REP 134->183|PF02770|9e-11|55.1|49/53|Acyl-CoA_dh_M| RP:PFM:REP 243->392|PF00441|5e-20|34.7|150/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 247->392|PF00441|1.3e-40|34.2|146/150|Acyl-CoA_dh_1| HM:PFM:REP 134->184|PF02770|7.9e-20|46.0|50/52|Acyl-CoA_dh_M| HM:PFM:REP 15->128|PF02771|8e-15|25.0|108/113|Acyl-CoA_dh_N| GO:PFM:NREP 6 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 5->243|1siqA2|5e-31|21.3|225/236|e.6.1.1| RP:SCP:REP 243->393|1bucA1|4e-33|29.8|151/151|a.29.3.1| HM:SCP:REP 4->243|1jqiA2|2.6e-52|32.5|231/231|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 241->394|2c12A1|2.8e-47|37.0|154/0|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 5684 OP:NHOMOORG 714 OP:PATTERN 44----6777977867-242321C96661-7B-----------------------------3551--- 4446Q2-3---745UtcGG-Gd22feGGGGGOefofRb**4T7Z1133-11-646658--FBR1EEQHIFD--------3848-----1111--22---41445564545--------------------------66587---A3-1-1------------------12-------------68967--1E735555545555555553455645557BA9A11------43-111111-11111111---2----------------------------------------------------------------------11315444444444423222221-6-3-3-13-A91596-17---11-3-61-IIIL-----1-QHI333MCMKI88787885755-33B33B3977O-3552524446458D8O8AAA4555C8G111111118----886------------------------------JKQF17PFBLBACDMAA7AAA99JEEEEE8GJAVPlZZ15CFA95ADBLCFFJW-17----35-------111C662WBB-----------765-A-5--7777A955---------------------------32-6B254C513222236922225295253---1---------2-5-1--2223233222-2222222212222222221-------1433144443342421411121111------1-----1----2111115555-EB23---------------HHIEHBE6874-IIIK7F9BDB7ACB536-------------2-----24-225555555555------12AA8799----------1-------------------------1--11-1------ ----448-731-888DA9996677659995878767998879978A7555759B786446563-111--1--1-1------11111---463A4446555668AAB-B75GDUBBED67658D9IA3H6V*E-FBS6965C78HB4A775C52G9BBBL9GI6EBD576BBEHCG-342I11143525983544D7989 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 389 STR:RPRED 99.0 SQ:SECSTR ####cccccccHHHHHHHHHHHHHHHHTGGGHHHHTTcccHHHHHHHTHHHHHHHHHTTTTGGGccGGGTcccccHHHHHHHHHHHHHHccTHTHHHHHHHHHHHHHHHHcccHHHHHHHHHGGGGcccccccEEcccTcTccTTTTccccEEEEETTEEEEEEEEEccTTTccccEEEEEEEEcccTTccccTEEEEEcHHHHHTccGGGEEEEEccccccccEEEEEEEEEEGGGccccTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccTTcccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGGcTTccHHHHHHHHTTTTTccccTTTHHHHHHHHHHH PSIPRED cccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHccccEEEEEEccccccccccHHHcEEEEEEEccEEEEEEEEEEEcccccccEEEEEEEccccccccccEEEEEEEcccccEEEEcccccccccccccccEEEEccEEccHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcc //