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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE10
DDBJ      :fadE10       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  495/915 : Eukaryota  165/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:397 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   41->386 2pg0B PDBj 9e-40 32.5 %
:RPS:PDB   1->396 3d9dC PDBj 4e-63 21.7 %
:RPS:SCOP  1->230 1rx0A2  e.6.1.1 * 2e-46 27.3 %
:RPS:SCOP  233->391 1bucA1  a.29.3.1 * 3e-17 21.8 %
:HMM:SCOP  2->244 1w07A3 e.6.1.2 * 1.3e-68 37.3 %
:HMM:SCOP  231->393 2d29A1 a.29.3.1 * 3.6e-26 33.8 %
:RPS:PFM   8->122 PF02771 * Acyl-CoA_dh_N 2e-07 34.6 %
:RPS:PFM   126->177 PF02770 * Acyl-CoA_dh_M 1e-09 51.9 %
:RPS:PFM   233->386 PF00441 * Acyl-CoA_dh_1 4e-10 36.6 %
:HMM:PFM   231->389 PF00441 * Acyl-CoA_dh_1 1.3e-38 35.4 147/150  
:HMM:PFM   6->122 PF02771 * Acyl-CoA_dh_N 7.2e-24 35.5 110/113  
:HMM:PFM   126->177 PF02770 * Acyl-CoA_dh_M 2.5e-21 51.9 52/52  
:HMM:PFM   164->213 PF09912 * DUF2141 0.00034 22.4 49/111  
:BLT:SWISS 1->391 ACDC_BACSU 2e-34 27.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55377.1 GT:GENE fadE10 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(548363..549556) GB:FROM 548363 GB:TO 549556 GB:DIRECTION - GB:GENE fadE10 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD55377.1 LENGTH 397 SQ:AASEQ MRIAYTPQQEELRAELRDYFARLITPERRAALSATTGEYGQGNVYREVVREMGRDGWLALGWPKEFGGQDRPTMDQLIFTDEAAIAGAPVPFLTINSVAPTIMHYGSEEQKRFFLPKIAAGELHFAIGYSEPGAGTDLASLRTTAVRDGDEYVINGQKMWTSLIAYADYVWLAVRTDPNAKKHKGISMLIVPTDAEGFSWTPVHTMAGPDTSATYYQDVRVPVSSLVGQENGGWALITNQLNHERVALTSAGSLLTGLQQTVEWARTTKAADGSRVIDREWVRVNLAKVHAKVEYLKLLNWEIASRADQGGAAAPRPWDASTCKVYGTELATEAYRLLMEVLGPQAYLRQDSVGAELRGRLERLHRAALILTFGGGTNEVQRDIIAMTALRQPAAAR GT:EXON 1|1-397:0| BL:SWS:NREP 1 BL:SWS:REP 1->391|ACDC_BACSU|2e-34|27.9|373/380| BL:PDB:NREP 1 BL:PDB:REP 41->386|2pg0B|9e-40|32.5|332/377| RP:PDB:NREP 1 RP:PDB:REP 1->396|3d9dC|4e-63|21.7|387/430| RP:PFM:NREP 3 RP:PFM:REP 8->122|PF02771|2e-07|34.6|107/113|Acyl-CoA_dh_N| RP:PFM:REP 126->177|PF02770|1e-09|51.9|52/53|Acyl-CoA_dh_M| RP:PFM:REP 233->386|PF00441|4e-10|36.6|142/150|Acyl-CoA_dh_1| HM:PFM:NREP 4 HM:PFM:REP 231->389|PF00441|1.3e-38|35.4|147/150|Acyl-CoA_dh_1| HM:PFM:REP 6->122|PF02771|7.2e-24|35.5|110/113|Acyl-CoA_dh_N| HM:PFM:REP 126->177|PF02770|2.5e-21|51.9|52/52|Acyl-CoA_dh_M| HM:PFM:REP 164->213|PF09912|0.00034|22.4|49/111|DUF2141| GO:PFM:NREP 6 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 1->230|1rx0A2|2e-46|27.3|220/231|e.6.1.1| RP:SCP:REP 233->391|1bucA1|3e-17|21.8|147/151|a.29.3.1| HM:SCP:REP 2->244|1w07A3|1.3e-68|37.3|236/0|e.6.1.2|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 231->393|2d29A1|3.6e-26|33.8|151/0|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 6073 OP:NHOMOORG 690 OP:PATTERN 33----6788A88976-243432B96661-7B-----------------------------4651--- 4556T2-3---745U*kNN-Nm22iqNNNNNWpq*qVh**4Z8h1133-11-443344--GFT1EDPKIMD--------283B---------1-11---41445454434--------------------------44487---A3-1--------------------12-------------78766--1B635555545555555553455545557998A11------42-------------------1----------------------------------------------------------------------11315444444444423222221-6-314-13-A91596-17---11-3-71-PKKT-----21VKM443QEROK99898996867-44C44C4CAAX-4665536556679F9QBACD7777C9H111111119----995-----------------------------1LLSM18SICNAACEMA9599999JGDDDC7CNAVUqmd14DFB95BFFMDFELW129----35-------112F573XBA-----------765-A-5--7787A855------------1--------1-----22-6D375C8-3645547A443564A6576---1-1-------2-4-1--2223233222-2222222212222222221-------13231333332313113-1121111-----------------4111115555-GE33---------------IIIEICE79961KKKM7GBDGCACCD346-------------2-----24-224444444444------12AA6677----------1-------------------------1--11-1------ ----358-841-AA9DAA9C889A78BAA69797679989799AAB866779BC897656664--------------------------6A6A8874545878CBB-A94FBOAAC967657C7HA3G7K*B-DAK5934B58E938555B72D9CBAK9FE7HBB666B8DFAF1114I42343424B92443C8A88 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 397 STR:RPRED 100.0 SQ:SECSTR ccccccHHHHHHHHHHHHHHHHTGGGHHHHHHTTcccHHHHHHHTHHHHHHHHHTTTTGGGccGGGTcccccHHHHHHHHHHTTccTTHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEEcccTTccTTTcccccEEEEETTEEEEEEEEEccTTTccccEEEEEEEEcTTccGGGGEEEEEEcHHHHHTccGGGEEEEEccccEEEEEEEEEEGGGccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccTTccccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGGcTTccHHHHHHcHHHHHHHHHTTTTccccTTTTHHHHHHHHHcTcTTHHH DISOP:02AL 394-397| PSIPRED ccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHccHHHHHHEEccccccccHHHcEEEEEEEccEEEEEEEEEEEEccccccEEEEEEEEcccccccccEEEEEEEcccccEEEcccccccccccccEEEcccEEcHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccc //