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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE12
DDBJ      :fadE12       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  545/915 : Eukaryota  165/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:386 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->385 1jqiA PDBj 2e-72 40.1 %
:RPS:PDB   10->381 3d9fC PDBj 2e-93 23.1 %
:RPS:SCOP  10->232 1rx0A2  e.6.1.1 * 6e-62 32.9 %
:RPS:SCOP  234->385 1bucA1  a.29.3.1 * 2e-34 49.7 %
:HMM:SCOP  10->234 1jqiA2 e.6.1.1 * 1.1e-74 40.4 %
:HMM:SCOP  232->386 2c12A1 a.29.3.1 * 2.4e-55 51.6 %
:RPS:PFM   14->124 PF02771 * Acyl-CoA_dh_N 1e-17 40.5 %
:RPS:PFM   127->178 PF02770 * Acyl-CoA_dh_M 2e-09 46.2 %
:RPS:PFM   234->384 PF00441 * Acyl-CoA_dh_1 9e-35 46.7 %
:HMM:PFM   234->384 PF00441 * Acyl-CoA_dh_1 7.9e-53 46.0 150/150  
:HMM:PFM   16->124 PF02771 * Acyl-CoA_dh_N 1.8e-29 34.9 109/113  
:HMM:PFM   127->178 PF02770 * Acyl-CoA_dh_M 5.3e-25 50.0 52/52  
:BLT:SWISS 2->385 ACDP_MYCTU e-180 84.6 %
:PROS 129->141|PS00072|ACYL_COA_DH_1
:PROS 342->361|PS00073|ACYL_COA_DH_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55850.1 GT:GENE fadE12 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1109865..1111025 GB:FROM 1109865 GB:TO 1111025 GB:DIRECTION + GB:GENE fadE12 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD55850.1 LENGTH 386 SQ:AASEQ MAGNPDFDLFKLEDFHDELRAAIRALAEKEIAPYAKDVDGNSRFPEEALSALNAAGFNAVHVPDAYGGQGADSVATCIVIEEVARVCGSSSLIPAVNKLGTMGLILNGSEELKQKVLPDIVNGEMASYALSEREAGSDAASMRTRARQDGDDWILNGSKCWITNGGKSSWYTVMAVTDPDKGANGISAFMVHKDDEGFVVGPLEHKLGIKGSPTAELYFENCRIPGDRIIGEPGTGFKTALQTLDHTRPTIGAQAVGLAQGALDAAIAYTKDRKQFGQAIADFQNTQFMLADMAMKIEAARLMVYTSAARAERGEKNLGFISAAAKCFASDVAMEVTTNAVQLFGGAGYTTDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLRG GT:EXON 1|1-386:0| BL:SWS:NREP 1 BL:SWS:REP 2->385|ACDP_MYCTU|e-180|84.6|384/389| PROS 129->141|PS00072|ACYL_COA_DH_1|PDOC00070| PROS 342->361|PS00073|ACYL_COA_DH_2|PDOC00070| SEG 252->266|gaqavglaqgaldaa| BL:PDB:NREP 1 BL:PDB:REP 11->385|1jqiA|2e-72|40.1|374/384| RP:PDB:NREP 1 RP:PDB:REP 10->381|3d9fC|2e-93|23.1|372/430| RP:PFM:NREP 3 RP:PFM:REP 14->124|PF02771|1e-17|40.5|111/113|Acyl-CoA_dh_N| RP:PFM:REP 127->178|PF02770|2e-09|46.2|52/53|Acyl-CoA_dh_M| RP:PFM:REP 234->384|PF00441|9e-35|46.7|150/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 234->384|PF00441|7.9e-53|46.0|150/150|Acyl-CoA_dh_1| HM:PFM:REP 16->124|PF02771|1.8e-29|34.9|109/113|Acyl-CoA_dh_N| HM:PFM:REP 127->178|PF02770|5.3e-25|50.0|52/52|Acyl-CoA_dh_M| GO:PFM:NREP 6 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 10->232|1rx0A2|6e-62|32.9|222/231|e.6.1.1| RP:SCP:REP 234->385|1bucA1|2e-34|49.7|151/151|a.29.3.1| HM:SCP:REP 10->234|1jqiA2|1.1e-74|40.4|225/231|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 232->386|2c12A1|2.4e-55|51.6|155/0|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 7184 OP:NHOMOORG 740 OP:PATTERN 55----6888A88977-243432DA6661-7C-----------------------------5661--- 4556X3-5111836Z*nRR-Rn33puRRRRRZst*tbr**4i9n1134-11-667668--HGX1FIUNKOF--------384B-----11111122---41545564565--------------------------66599---C3-2-1112--------------124-------------88978--1E745555546555555554455645567CAAB11------531112121-11111112---2--1------------------------------------------------------------------111315444444444423222221-6-316-13-B91598-17---11-3-71-SLLW-----52YOQ554TGURLAA9A9AA7978-44C44G4CABV-5666746667679H9TBADF7777D9J11111111B----9B6-----------------------------1MNXN18SICQFFHLTHBDIIFDDOFLLLMDKUDXZwsm35IJDC7EGGPFKLQd338-1--56------1111H774kHK-----------765-B-5--8888EB66----1-------1--------1-----43-6D486DA15655549C555585C6577---121-------3-4-12-2223233222-222222221222222222211-----14331444443424224-1121111--111121111121---6111116565-LD43---------------KJLHKDJ8A9B2OORQALEEKHFGGHA7B-------------2-----241226655555555-------2CCA9BB----------1-------------------------1--11-1------ ----56A-941-99AEBCAE9A9B8ACCC8A9A8789A9A8AABCCA8789ABF8A7767774--------------------------8B8B8876555899CBD-B75HEUBBFEA899AC9GB7I9R*C-EAQ6986C79FA49A78B74GADBCPAGI7ICE998DEFKDH2233Z42253667GA3544F9A9B ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 386 STR:RPRED 100.0 SQ:SECSTR cTTccccTcccccHHHHHHHHHHHHHHHHTGGGHTTcccHHHHHHHHHHHHHHHTTTTGGGccGGGTcccccHHHHHHHHHHHHTTccTTHHHHHHHHHHHHHHHHcccHHHHHHHcHHHHccccEEEEcccTTccTTccccccEEEEETTEEEEEEEEEccTTTTcccEEEEEEEEcccTTGGGEEEEEEcHHGGGEEEEEcccccccTTccccEEEEEEEEEEGGGccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccTTcccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGGcTTccHHHHHHHHTTTTTccccTHHHHHHHcTHHHHT DISOP:02AL 1-4| PSIPRED cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHcccEEEEEEccccccccHHHcEEEEEEEccEEEEEEEEEEEcccccccEEEEEEEEccccccccEEEEEEEcccccEEEcccccccccccccccEEEEccEEEcHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcc //