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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE13
DDBJ      :fadE13       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  539/915 : Eukaryota  169/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:379 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->367 1rx0C PDBj e-111 54.4 %
:RPS:PDB   2->367 3d9dA PDBj 4e-80 19.1 %
:RPS:SCOP  2->225 1rx0A2  e.6.1.1 * 1e-76 58.5 %
:RPS:SCOP  229->367 1siqA1  a.29.3.1 * 3e-23 22.5 %
:HMM:SCOP  2->239 1w07A3 e.6.1.2 * 4e-82 45.8 %
:HMM:SCOP  224->378 2c12A1 a.29.3.1 * 5.1e-53 52.9 %
:RPS:PFM   6->116 PF02771 * Acyl-CoA_dh_N 4e-16 36.0 %
:RPS:PFM   120->172 PF02770 * Acyl-CoA_dh_M 2e-14 58.5 %
:RPS:PFM   226->366 PF00441 * Acyl-CoA_dh_1 2e-20 37.1 %
:HMM:PFM   226->375 PF00441 * Acyl-CoA_dh_1 7e-53 49.7 149/150  
:HMM:PFM   6->116 PF02771 * Acyl-CoA_dh_N 2.8e-31 40.5 111/113  
:HMM:PFM   120->171 PF02770 * Acyl-CoA_dh_M 2e-23 57.7 52/52  
:BLT:SWISS 4->367 ACAD8_MOUSE e-111 54.1 %
:PROS 334->353|PS00073|ACYL_COA_DH_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55883.1 GT:GENE fadE13 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1145504..1146643 GB:FROM 1145504 GB:TO 1146643 GB:DIRECTION + GB:GENE fadE13 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD55883.1 LENGTH 379 SQ:AASEQ MFTLDEDEKAIRDTAREFADEFLAPNALDWDEHKHFPVDVLRKAGPLGLGGIYVHEDMGGSGLRRLDAVRIFEQLATGCPSVAAYISIHNMATWMIDAYGSPEQRSRWLPGLTAMELLGSYALTEPGVGSDAAALSTKAVRDGDDYILNGAKQFISGAGANDVYVMMVRTGDDGARGISALIVPADTPGLSVGPNEKKMGWNAQPTRQVILEDARVPVANRLGAEGDGFRIAMNGLNGGRLNIAACSVGGAQAALDKTVPYLAQRNAFGKPLLRNQALQFDLADMRTQLEAARTLLWRAAAALDADAPDKVELCAMAKRFATDAGFEVANKALQLHGGYGYLAEYGLEKIVRDLRVHQILEGTNEIMRVVVARSVVGAA GT:EXON 1|1-379:0| BL:SWS:NREP 1 BL:SWS:REP 4->367|ACAD8_MOUSE|e-111|54.1|364/413| PROS 334->353|PS00073|ACYL_COA_DH_2|PDOC00070| SEG 289->307|leaartllwraaaaldada| SEG 337->348|ggygylaeygle| SEG 368->378|rvvvarsvvga| BL:PDB:NREP 1 BL:PDB:REP 4->367|1rx0C|e-111|54.4|364/383| RP:PDB:NREP 1 RP:PDB:REP 2->367|3d9dA|4e-80|19.1|366/432| RP:PFM:NREP 3 RP:PFM:REP 6->116|PF02771|4e-16|36.0|111/113|Acyl-CoA_dh_N| RP:PFM:REP 120->172|PF02770|2e-14|58.5|53/53|Acyl-CoA_dh_M| RP:PFM:REP 226->366|PF00441|2e-20|37.1|140/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 226->375|PF00441|7e-53|49.7|149/150|Acyl-CoA_dh_1| HM:PFM:REP 6->116|PF02771|2.8e-31|40.5|111/113|Acyl-CoA_dh_N| HM:PFM:REP 120->171|PF02770|2e-23|57.7|52/52|Acyl-CoA_dh_M| GO:PFM:NREP 6 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 2->225|1rx0A2|1e-76|58.5|224/231|e.6.1.1| RP:SCP:REP 229->367|1siqA1|3e-23|22.5|138/154|a.29.3.1| HM:SCP:REP 2->239|1w07A3|4e-82|45.8|238/0|e.6.1.2|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 224->378|2c12A1|5.1e-53|52.9|155/0|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 6852 OP:NHOMOORG 738 OP:PATTERN 55----5877977867-243432C96661-7C-----------------------------5661--- 4556V4-5111846U*iMM-Mj33nqMMMMMUpnznXl**4e8o1144-21-667669--IGV1FFUKIME--------384B-----11111122---41445564555--------------------------67688---B311----1---------------13-------------88867--1D736666646656565663555546667BA9A11------53-22222212222212211-2--1------------------------------------------------------------------111315444444444423222221-6-314-13-991596-17---11-3-71-QKKU-----52ULP344QGTQK99898996867-55C55E4CAAW-8668646667679FATBACE7777D9H11111111B----996-----------------------------1MMXL17SHDRCBDHOCB8CCB99NEHGHH9IQAYXsng35EGBC6EFFOEHKQa228----56-------111G773fHJ-----------765-B-5--7787CC66------------1--------1-----43-8E487EB15766649D6666A6A6677---221-------2-4-1--2223233222-2222222212222222221-----1124231444443414224-1121111------1-----1----5221226666-KD23---------------IIIFICH8A891OOPQBLEHKGDFGG86A111111111----2-----46-224444444555------12BB98AA----------1-------------------------1--11-1------ ----569-941-AAAEBCBD999B8ACCC8A8A878AA9A8AABCC977889BE9A8767774-1---------1------1--1----8B7B8876556898CCC-B85HEVBBED87999D9IB6J9S*D-FBR7A84C79HB49B68C83EACBBMAGH7IBE777BBFJEG2334i43364657DB3544G9A9A ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 367 STR:RPRED 96.8 SQ:SECSTR TccccHHHHHHHHHHHHHHHHTGGGHHHHHcHHHHHHHHHHHHHHHTTTTGGGccGGGTcccccHHHHHHHHHHHHTTccTTHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEEcccTTccTTccccccEEEEETTEEEEEEEEcccTTTTTccEEEEEEEEcccTGGGEEEEEEcHHHHHEEEEEcccccccTTccccEEEEEEEEEEGGGccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccTTcccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGGcTTccHHHHHHHHTTTTTccccTTTT############ PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEcccccccccHHHcEEEEEEEccEEEEEEEEEEEcccccccEEEEEEEccccccccEEEEEEEcccccEEEEcccccccccccccEEEEEccEEccHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccc //