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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE14
DDBJ      :fadE14       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  131/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:399 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   52->213 1ukwA PDBj 5e-09 32.9 %
:RPS:PDB   31->388 1egcA PDBj 8e-19 13.4 %
:RPS:SCOP  31->213 1r2jA2  e.6.1.1 * 2e-29 23.6 %
:RPS:SCOP  346->398 1is2A1  a.29.3.2 * 2e-04 7.5 %
:HMM:SCOP  1->226 2c12A2 e.6.1.1 * 3.5e-45 35.6 %
:HMM:SCOP  238->401 2c12A1 a.29.3.1 * 2.9e-13 27.6 %
:HMM:PFM   243->374 PF08028 * Acyl-CoA_dh_2 3.4e-18 39.7 126/134  
:HMM:PFM   15->113 PF02771 * Acyl-CoA_dh_N 3.7e-14 35.7 98/113  
:HMM:PFM   133->166 PF02770 * Acyl-CoA_dh_M 3.1e-06 36.4 33/52  
:BLT:SWISS 52->393 SOXC_RHOSG 1e-26 31.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56045.1 GT:GENE fadE14 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1329201..1330400) GB:FROM 1329201 GB:TO 1330400 GB:DIRECTION - GB:GENE fadE14 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD56045.1 LENGTH 399 SQ:AASEQ MTTIVAAAEAIDVAAALAADFAAGAAARDAQRRLPDEQVAALKASGLLALSVPVEYGGPAAPATVLAEVFRILAHADPSLAQIPHSHFVFLEALRLQGTDEQRARFYEQVRAGALLANAQSERGPHPIDVDTTTLVRRPSGDYLLSGRKFYATGALFADWVVVRASLSEGAEAPTAATPKAIAFVPRDAAGLTVLDDWDGMGQRTTASGTVTLDDVAVPAADVVPFSPIFTRPTVYGARAQLLHTAIDVGIATGALAAGVCQARRARPHFEAGVAAAVDDPTLLTVAGELAVTVRGAEALLAAAARAVDAAAANPTEESAAEASIAVAAAKVAAVRAALAATNGLFELGGTSSATAAANLSRYWRDARTHTLHDPTRWKVQHIGRHTLTGAPPPRHGQI GT:EXON 1|1-399:0| BL:SWS:NREP 1 BL:SWS:REP 52->393|SOXC_RHOSG|1e-26|31.7|338/417| SEG 6->30|aaaeaidvaaalaadfaagaaarda| SEG 40->51|aalkasgllals| SEG 214->225|ddvavpaadvvp| SEG 297->341|aeallaaaaravdaaaanpteesaaeasiavaaakvaavraalaa| BL:PDB:NREP 1 BL:PDB:REP 52->213|1ukwA|5e-09|32.9|155/379| RP:PDB:NREP 1 RP:PDB:REP 31->388|1egcA|8e-19|13.4|344/387| HM:PFM:NREP 3 HM:PFM:REP 243->374|PF08028|3.4e-18|39.7|126/134|Acyl-CoA_dh_2| HM:PFM:REP 15->113|PF02771|3.7e-14|35.7|98/113|Acyl-CoA_dh_N| HM:PFM:REP 133->166|PF02770|3.1e-06|36.4|33/52|Acyl-CoA_dh_M| RP:SCP:NREP 2 RP:SCP:REP 31->213|1r2jA2|2e-29|23.6|174/209|e.6.1.1| RP:SCP:REP 346->398|1is2A1|2e-04|7.5|53/189|a.29.3.2| HM:SCP:REP 1->226|2c12A2|3.5e-45|35.6|225/0|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 238->401|2c12A1|2.9e-13|27.6|156/0|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 404 OP:NHOMOORG 140 OP:PATTERN -------------------------------------------------------------------- --------22----211--------A------14443444-1-1111--34-----1---------21--2---------------------------------------------------------------------------1--1--2--------------1-2-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4--19--------------------33133125-1--D33534-2132233-------------1-111111----1---------------------------------1---------14444134551112-5555-36373-11--11---3--43--2--3----3---------------------------------------1111----------------------------------------------------------------------------1-----------------------------------21------1---------------------------------------------------------------------4554547---715555373835652-643--------------------------2---------------------------------------------------------------------- ----------------1-------1--------------------------111---1----------------------------------1---------1-------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 365 STR:RPRED 91.5 SQ:SECSTR ##############################HccccHHHHHHHHHHTcccTTccTTTTcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHTccccEEEcccTTccccGGGcccEEEEcccEEEEEEEEEEEETGGGccEEEEEEEcccccTTccHHHHEEEEEEETTcTTEEEcccccccccTTccEEEEEEEEEEEGGGccccTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccccccGGGcHHHHHHHHHHHHHHHH###HHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGcTTcHHHHHHHHHGGGGTTTccHHHHHHHHHHHHHTHHHHHHTc# PSIPRED ccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccEEcccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccEEEEEcccccccccccccEEEEEEEccEEEEEEEEEEEcccccccEEEEEEEEcccccccccccccEEEEEEcccccEEEcccccccccccccEEEEEEccEEEcHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHEEEEEcccHHHHHHHHHHHHHccccccccccc //