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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE16
DDBJ      :fadE16       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  81/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:389 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   111->280 2z1qB PDBj 5e-08 27.5 %
:RPS:PDB   5->383 3b96A PDBj 2e-20 15.7 %
:RPS:SCOP  9->229 1rx0A2  e.6.1.1 * 8e-17 16.2 %
:RPS:SCOP  245->386 1siqA1  a.29.3.1 * 2e-05 10.7 %
:HMM:SCOP  7->232 1jqiA2 e.6.1.1 * 2.5e-44 32.7 %
:HMM:SCOP  230->387 2c12A1 a.29.3.1 * 1e-29 35.4 %
:HMM:PFM   242->383 PF00441 * Acyl-CoA_dh_1 8.4e-29 40.0 140/150  
:HMM:PFM   14->126 PF02771 * Acyl-CoA_dh_N 1.2e-17 33.3 108/113  
:HMM:PFM   131->181 PF02770 * Acyl-CoA_dh_M 2.3e-13 37.3 51/52  
:BLT:SWISS 6->386 ACDC_MYCTU 6e-23 32.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56207.1 GT:GENE fadE16 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1527551..1528720) GB:FROM 1527551 GB:TO 1528720 GB:DIRECTION - GB:GENE fadE16 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD56207.1 LENGTH 389 SQ:AASEQ MTHAEMTAPPFEPTAEHRTLREQARQVAAEFAPRAVAVRRHALEHGEMHPELWRAFRANGLAGAALSPEVGGRGAGVLGAALVLEAFAEHGIVLWMPALTTAIACAMERLGPAPARDAWLPRIAAGTAQLAMAATEPESGHNLFRVRTEIRVDSDGFVVSGRKRVSSGVDLAERVLVFGRATEGFTTVLVDPRAPGVTVTEVPMGFREGVRQFELDFHEVAVPAADVVGRAGAGLLTLWPFTHVERVLTAAICTGSARHSIERAVRHAKTRTVVGSAPIGANQALAHPLARLHARTAAVQLLVHRCAARIDADHPDSAAEAAAAKLLAADLAFDTADHTTQVLGAEAWDERSGWIDLYLDARLARSGPVSNEFALNHLAEHVLGLPLHR GT:EXON 1|1-389:0| BL:SWS:NREP 1 BL:SWS:REP 6->386|ACDC_MYCTU|6e-23|32.9|377/388| SEG 69->89|evggrgagvlgaalvleafae| SEG 124->134|aagtaqlamaa| SEG 158->169|vvsgrkrvssgv| SEG 284->298|alahplarlhartaa| SEG 311->337|dadhpdsaaeaaaakllaadlafdtad| BL:PDB:NREP 1 BL:PDB:REP 111->280|2z1qB|5e-08|27.5|167/549| RP:PDB:NREP 1 RP:PDB:REP 5->383|3b96A|2e-20|15.7|376/554| HM:PFM:NREP 3 HM:PFM:REP 242->383|PF00441|8.4e-29|40.0|140/150|Acyl-CoA_dh_1| HM:PFM:REP 14->126|PF02771|1.2e-17|33.3|108/113|Acyl-CoA_dh_N| HM:PFM:REP 131->181|PF02770|2.3e-13|37.3|51/52|Acyl-CoA_dh_M| RP:SCP:NREP 2 RP:SCP:REP 9->229|1rx0A2|8e-17|16.2|216/231|e.6.1.1| RP:SCP:REP 245->386|1siqA1|2e-05|10.7|140/154|a.29.3.1| HM:SCP:REP 7->232|1jqiA2|2.5e-44|32.7|223/231|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 230->387|2c12A1|1e-29|35.4|158/0|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 122 OP:NHOMOORG 89 OP:PATTERN ------------------------1------2------------------------------------ ----2--------132211-13--1311111134443127-11-----------------121-1111311----------------------------------1------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------1111-------111---1-111111111111-----1----1--1-------------1----------------------1--------------------------------------1-11----1-----1-----11----------11---------------1--1--------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111---------1---------------------------------------------------------------------------------------------------- --------------------------1---1-1-----------1--------1-------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 384 STR:RPRED 98.7 SQ:SECSTR ##cGTTccccccccHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHTcccHHHHHHHHHHTTTcTTccGGGTcccccHHHHHHHHHHHHHHcHHHHHHHHHTTTTHHHHHHccHHHHHHHHHHHHTTcccEEEEcccTTccccGGGcccEEcTTccEEEEEEEEEEEETTTTccEEEEEEEEEEEEEEEEEEGGGccEEEccccccccTTccEEEEEEEEEEEEGGGEEccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEETTcEEGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHccTTcHHHHHHHHGGGGTccccHHHHHHHHHHHHHHTT### DISOP:02AL 1-2, 387-389| PSIPRED ccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHccHHHHEEEEccccccccHHHcEEEEEEEccEEEEEEEEEEEEccccccEEEEEEEccccEEEEEEEcccccEEEccccHHHcccccccEEEEccEEEcHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccc //