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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE18
DDBJ      :fadE18       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  505/915 : Eukaryota  164/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:418 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   6->415 2pg0B PDBj 1e-41 34.4 %
:RPS:PDB   2->416 1bucA PDBj 6e-54 31.6 %
:RPS:SCOP  2->258 1siqA2  e.6.1.1 * 1e-41 26.8 %
:RPS:SCOP  272->418 1siqA1  a.29.3.1 * 1e-20 22.6 %
:HMM:SCOP  1->259 2c12A2 e.6.1.1 * 9.2e-49 32.8 %
:HMM:SCOP  266->417 1bucA1 a.29.3.1 * 3.3e-38 39.7 %
:RPS:PFM   5->139 PF02771 * Acyl-CoA_dh_N 1e-04 34.0 %
:RPS:PFM   150->203 PF02770 * Acyl-CoA_dh_M 3e-10 47.2 %
:RPS:PFM   266->416 PF00441 * Acyl-CoA_dh_1 3e-14 36.0 %
:HMM:PFM   266->416 PF00441 * Acyl-CoA_dh_1 1.4e-42 41.3 150/150  
:HMM:PFM   150->202 PF02770 * Acyl-CoA_dh_M 5.9e-20 50.0 52/52  
:HMM:PFM   5->145 PF02771 * Acyl-CoA_dh_N 4.9e-13 27.9 111/113  
:BLT:SWISS 2->407 ACDS_CLOAB 8e-43 31.3 %
:PROS 152->164|PS00072|ACYL_COA_DH_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56937.1 GT:GENE fadE18 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2262369..2263625) GB:FROM 2262369 GB:TO 2263625 GB:DIRECTION - GB:GENE fadE18 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD56937.1 LENGTH 418 SQ:AASEQ MFEWSETDEMIRQAVRGFIDKEVRPHLDALEDGTMSPYPIARKLFAEFGIDAMAGEQVDSLLAKKRARQEALAAGQEPASTTKRGAGDLLGGQASMAAVVVGELSGVCMGLLTAVGVSIGLGAATIMSRGTLAQQERWLRDIVTMDKVAAWAITEPDSGSDAFGGMKTYVRRDGEDYLLTGHKTFITNGPYADIIVVYAKLDEPGVDRRDRKVLTFVLDKGMEGLTQSKPFKKMGLHASPTGELFFDNVRLGRDRLLGETEDHRGGDGRDSARANFTTERIGVAFMALGIIAECHRLCIDYAKNRRLWGQEIGRFQLVQLKLATMEIARINVQNMVFSTLERARAGKLPTLAEASAMKLYAAQAATEVAMEAVQLFGGNGYMSEYRVEQLARDAKSLMIYAGSNEIQVTHIAKGLLGR GT:EXON 1|1-418:0| BL:SWS:NREP 1 BL:SWS:REP 2->407|ACDS_CLOAB|8e-43|31.3|367/379| PROS 152->164|PS00072|ACYL_COA_DH_1|PDOC00070| SEG 361->374|aaqaatevameavq| BL:PDB:NREP 1 BL:PDB:REP 6->415|2pg0B|1e-41|34.4|372/377| RP:PDB:NREP 1 RP:PDB:REP 2->416|1bucA|6e-54|31.6|380/383| RP:PFM:NREP 3 RP:PFM:REP 5->139|PF02771|1e-04|34.0|106/113|Acyl-CoA_dh_N| RP:PFM:REP 150->203|PF02770|3e-10|47.2|53/53|Acyl-CoA_dh_M| RP:PFM:REP 266->416|PF00441|3e-14|36.0|150/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 266->416|PF00441|1.4e-42|41.3|150/150|Acyl-CoA_dh_1| HM:PFM:REP 150->202|PF02770|5.9e-20|50.0|52/52|Acyl-CoA_dh_M| HM:PFM:REP 5->145|PF02771|4.9e-13|27.9|111/113|Acyl-CoA_dh_N| GO:PFM:NREP 6 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 2->258|1siqA2|1e-41|26.8|220/236|e.6.1.1| RP:SCP:REP 272->418|1siqA1|1e-20|22.6|146/154|a.29.3.1| HM:SCP:REP 1->259|2c12A2|9.2e-49|32.8|229/0|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 266->417|1bucA1|3.3e-38|39.7|151/151|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 4891 OP:NHOMOORG 699 OP:PATTERN 33----4566766756-132321C96661-7B-----------------------------3441--- 4556K3-5111645NbRDD-DT33RTDDDDDHRRXRLXqv4M6O1123-11-667668--CAP1CCPHHHD--------373B-----1111-122---41445464555--------------------------66578---A3-1--------------------12-------------67666--1C635555545555555553455545557A98A11------42-111111-11111111---1---------------------------------------------------------------------111315444444444423222221-6-3-4-13-A91596-17---11-3-61-EBBG-----1-HBA332FBIED77676774645-33833A3A76H-433142444545795D688A6666B8D111111117----864------------------------------CEJA17LD9G789AE87466566EA9A9A4AG5PJWRQ14AB8748A9FADDEU--6----34----------B542T9A-----------765-8-5--77779865---------------------------32-471549413222234322226244243---1---------2-3-1--2223233222-2222222212222222221-------13231333332313113-1121111------1-----1----3111114444-EA-----------------DDDBD8B4653-DDCF6A99C86779423-------------2-----24-224444444444-------2886677----------1-------------------------1--11-1------ ----568-731-998B8957777867A885777766876667768885677799574445554--------------------------6A686765454677BAC-B45HCRABED78969D8GB5I8T*D-DAP6854C76EA38858B62CA9B9J9EC6FBD577BBEFBF-232Y43354465C72344D8988 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 418 STR:RPRED 100.0 SQ:SECSTR TccccHHHHHHHHHHHHHHHHTTTTTHHHHHHHTcccHHHHHHHHHTTcGGGTTccGGGTccHHHHHHHTTTTGGGccGGGccccGGGGcTccHHHHHHHHHHHHHHcHHHHHHHHHHHHHTHHHHHHHccHHHHHHTHHHHHHTcccEEEEcccTTccccGGGcccEEEEcTTccEEEEEEEEEEETTTTccEEEEEEEcccccTcccTTcEEEEEEETTcTTEEEEEEccccccTTccEEEEEEEEEEEcGGGEEccTcTTcTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEETTEEGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGcTTccHHHHHHHHGGGGTTTccHHHHHHHHHHHHTHH PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEcccccccccHHHccEEEEEEEccEEEEccEEEEEcccccccEEEEEEEcccccccccccEEEEEEEEcccccEEEEcccccccccccccEEEEEccEEccHHHHcccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcc //