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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE2
DDBJ      :fadE2        putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  475/915 : Eukaryota  162/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:713 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   384->704 2pg0B PDBj 7e-19 25.9 %
:RPS:PDB   8->316 3d6bD PDBj 2e-11 13.4 %
:RPS:PDB   367->710 1egcA PDBj 8e-46 23.6 %
:RPS:SCOP  218->334 1bucA1  a.29.3.1 * 1e-10 19.8 %
:RPS:SCOP  368->564 1rx0A2  e.6.1.1 * 1e-34 24.6 %
:RPS:SCOP  570->708 1siqA1  a.29.3.1 * 2e-10 15.8 %
:HMM:SCOP  4->196 1jqiA2 e.6.1.1 * 3.7e-12 23.3 %
:HMM:SCOP  190->338 1r2jA1 a.29.3.1 * 1.7e-30 36.9 %
:HMM:SCOP  367->579 1w07A3 e.6.1.2 * 9.2e-58 37.3 %
:HMM:SCOP  566->710 1egdA1 a.29.3.1 * 3.5e-15 29.7 %
:RPS:PFM   386->456 PF02771 * Acyl-CoA_dh_N 7e-05 42.3 %
:RPS:PFM   464->511 PF02770 * Acyl-CoA_dh_M 8e-06 50.0 %
:RPS:PFM   568->705 PF00441 * Acyl-CoA_dh_1 7e-08 31.9 %
:HMM:PFM   206->326 PF00441 * Acyl-CoA_dh_1 1.5e-24 35.0 120/150  
:HMM:PFM   566->705 PF00441 * Acyl-CoA_dh_1 3.9e-15 30.0 140/150  
:HMM:PFM   460->511 PF02770 * Acyl-CoA_dh_M 3.7e-21 48.1 52/52  
:HMM:PFM   14->70 PF02771 * Acyl-CoA_dh_N 1.1e-07 43.6 55/113  
:HMM:PFM   369->456 PF02771 * Acyl-CoA_dh_N 2.6e-11 28.7 87/113  
:BLT:SWISS 124->342 ACAD8_DICDI 6e-05 23.8 %
:BLT:SWISS 378->705 YDIO_ECOLI 2e-20 29.5 %
:PROS 384->395|PS00136|SUBTILASE_ASP
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55290.1 GT:GENE fadE2 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 463862..466003 GB:FROM 463862 GB:TO 466003 GB:DIRECTION + GB:GENE fadE2 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD55290.1 LENGTH 713 SQ:AASEQ MRGWAGSVRPIATMRAEPEGFWRGYWPALADLGVFRVAVAEEAGGAGATVADLAVLLEQAAHDLVGGPVLTTALANLVTSGALAEDLPCGVALDTLDTLDSVAETGFSPESAQSLPALAETGSLSGSWPLVLGAAPGTAVLLPVRSADGRRWCLLPPDAPGLRVEPLRPTDPSTPLAAVHCAETPVTAGQVFTAPHRVEDLLVVLAAAELAGLAGWCLETAVDYAKVREQFGRKIGSFQAVKHICAWMLCRTELIRAVALDAAAAVDEGGAELPIAAAIAAAIALDAAVETAKDCIQVLGGIGFTWEHDAHFYLRRATALRQLLGGSARWRARVTELTRAGHRRTTGADRVLAADGVQVDGAAATGLAREVAAIAALPAEQQRAALVDAGLVMPHWPPPYGRGADPMTGLMISEELRRAGLAAPDLAIGGWAIPTLLQHGTQEQIDRFAWPTLHGEVVWCQLFSEPEAGSDLAALRTTATRVDGGWRLRGQKVWTSLGDRANWAICLARTDAEAPKHRGISYFLVDMKSPGLEVRPLVQITGEARFSEVFLDDVFVPDDCLVGALNNGWKIARSTLSAERIAMGGNGIGPALEELIAKLPATGPGAELIADRLGGFVADAIGGLLLEQRAALTVLAGGDAGAQSSVRKLVGVRHRQAVAEFAVEVAGPLGAQETAEVTEFLLTRCLSIAGGTEQILLTVAAERILGLPRDADS GT:EXON 1|1-713:0| BL:SWS:NREP 2 BL:SWS:REP 124->342|ACAD8_DICDI|6e-05|23.8|218/416| BL:SWS:REP 378->705|YDIO_ECOLI|2e-20|29.5|319/383| PROS 384->395|PS00136|SUBTILASE_ASP|PDOC00125| TM:NTM 3 TM:REGION 197->219| TM:REGION 243->265| TM:REGION 271->293| SEG 37->51|vavaeeaggagatva| SEG 201->215|llvvlaaaelaglag| SEG 257->273|avaldaaaavdeggael| SEG 275->288|iaaaiaaaialdaa| SEG 353->364|aadgvqvdgaaa| BL:PDB:NREP 1 BL:PDB:REP 384->704|2pg0B|7e-19|25.9|321/377| RP:PDB:NREP 2 RP:PDB:REP 8->316|3d6bD|2e-11|13.4|308/372| RP:PDB:REP 367->710|1egcA|8e-46|23.6|343/387| RP:PFM:NREP 3 RP:PFM:REP 386->456|PF02771|7e-05|42.3|71/113|Acyl-CoA_dh_N| RP:PFM:REP 464->511|PF02770|8e-06|50.0|48/53|Acyl-CoA_dh_M| RP:PFM:REP 568->705|PF00441|7e-08|31.9|138/150|Acyl-CoA_dh_1| HM:PFM:NREP 5 HM:PFM:REP 206->326|PF00441|1.5e-24|35.0|120/150|Acyl-CoA_dh_1| HM:PFM:REP 566->705|PF00441|3.9e-15|30.0|140/150|Acyl-CoA_dh_1| HM:PFM:REP 460->511|PF02770|3.7e-21|48.1|52/52|Acyl-CoA_dh_M| HM:PFM:REP 14->70|PF02771|1.1e-07|43.6|55/113|Acyl-CoA_dh_N| HM:PFM:REP 369->456|PF02771|2.6e-11|28.7|87/113|Acyl-CoA_dh_N| GO:PFM:NREP 6 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 3 RP:SCP:REP 218->334|1bucA1|1e-10|19.8|116/151|a.29.3.1| RP:SCP:REP 368->564|1rx0A2|1e-34|24.6|195/231|e.6.1.1| RP:SCP:REP 570->708|1siqA1|2e-10|15.8|139/154|a.29.3.1| HM:SCP:REP 4->196|1jqiA2|3.7e-12|23.3|193/231|e.6.1.1|1/2|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 190->338|1r2jA1|1.7e-30|36.9|149/153|a.29.3.1|2/3|Acyl-CoA dehydrogenase C-terminal domain-like| HM:SCP:REP 367->579|1w07A3|9.2e-58|37.3|212/0|e.6.1.2|2/2|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 566->710|1egdA1|3.5e-15|29.7|145/155|a.29.3.1|2/2|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 4398 OP:NHOMOORG 667 OP:PATTERN 22----5766766666-132332A85561-69-----------------------------2231--- 3335Q1-1---434LydEE-Ef11egEEEEEUfgtgQYv*3h7l1132----211341--EFS16BNFDLB--------1418-------111-22---11122231211--------------------------44477---73---1-------------------2-------------55466---7635555545555555553344535557A988-1------32------------------------------------------------------------------------------------------1121344444443431311211--5-3-4-13-871373-16---11-3-51-IGGS-----1-NED112G7GHC66765774754-2272291764R-333131433444774OA87A242297D111111116----775------------------------------IINK15JB8H668AG76144455G9777739H4QPhbW-29A752799G7DCEQ--5----23-------1-1D34-M99-----------644-7-4--6666A653---------------------------21-3625267-1111112611113172121-------------2-411--2223233222-2222222212222222221-------13131333332313113-1121111-----------------3111113333-97-1---------------AAA7A683442-BABB5B78765679324-------------1-----12-112333333333-------1664455------------------------------------1--11-1------ ----337-62--55687878655745888375765677666776876433565A664334443--------------------------35273334334464765-843EAM87965242694E72B4IxA-B9J5423635C623324841A6AB9H58B3C9846497BA8B13-2-2113345695343154445 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 674 STR:RPRED 94.5 SQ:SECSTR #######TTTTHHHHHHHccccHHHHHHHHHHTcccTTccTTTTcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHTccccEEEEcccTTccccGGGccEEEEEEEEEEEETGGGccEEEEEEEccccTTccEEETTcTTEEEccccccccTccEEEEEEEEEEEEGGGccccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTTHHHHHHHHHHHHHHHHHHTccccHHHHHHHH###############################cTHHHHHHHccccHHHHHHHHHHHTcccTTccTTTTccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHTccccEEEEcccTTccccGGGcccEEEEcccEEEEEEEEEEEETGGGccEEEEEEEccTTccHHHHEEEEEEETTcTTEEEcccccccccccEEEEEEEEEEEEGGGccccTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccccccGGGHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGcTTcHHHHHHHHGGGGTTTccHHHHHHHHHHHHHHTTccHH# DISOP:02AL 709-713| PSIPRED cHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHHHccccccccccccccEEcccEEEEEEEEEEEccccccEEEEEEEccccEEEEEEEcccccEEEEEEEccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccEEEEEEEEcccccccHHHcEEEEEEEccEEEEEEEEEEEcccccccEEEEEEEEcccccccccEEEEEEEcccccEEEcccHHccccccccEEEEcccEEcHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccc //