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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE20
DDBJ      :fadE20       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  519/915 : Eukaryota  174/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:399 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->382 2wbiA PDBj 7e-48 37.4 %
:RPS:PDB   3->381 3d9gB PDBj 4e-60 18.8 %
:RPS:SCOP  3->239 2c0uA2  e.6.1.1 * 4e-38 19.1 %
:RPS:SCOP  243->382 1bucA1  a.29.3.1 * 7e-26 29.3 %
:HMM:SCOP  3->240 2c12A2 e.6.1.1 * 2.2e-60 35.6 %
:HMM:SCOP  242->392 1bucA1 a.29.3.1 * 2e-42 37.7 %
:RPS:PFM   131->183 PF02770 * Acyl-CoA_dh_M 8e-08 56.9 %
:RPS:PFM   243->381 PF00441 * Acyl-CoA_dh_1 2e-19 38.1 %
:HMM:PFM   242->390 PF00441 * Acyl-CoA_dh_1 2.4e-38 34.2 149/150  
:HMM:PFM   131->183 PF02770 * Acyl-CoA_dh_M 3.1e-21 47.1 51/52  
:HMM:PFM   10->127 PF02771 * Acyl-CoA_dh_N 3.3e-17 24.8 109/113  
:BLT:SWISS 48->382 ACD11_CHICK 5e-49 36.3 %
:PROS 349->368|PS00073|ACYL_COA_DH_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57085.1 GT:GENE fadE20 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2416519..2417718) GB:FROM 2416519 GB:TO 2417718 GB:DIRECTION - GB:GENE fadE20 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD57085.1 LENGTH 399 SQ:AASEQ MPIDLTYSADVEDLVERTRVFVRETVLPVEDEHGGDITAAGGDELRVRLQEQARRAGVFAPHAPVEYGGLGLSMSDRAPVFEEAGYSLFGPTALNIAAPDEGNVHMLAHIADPDQKAQYLEPLARGDLRSAFAMTEPAPGAGSDPAALTTRADKVAGGWRINGHKHFITGADGAGFFIVMARTSGEPGVRGGATMFLAPADTPGLRVGRHITTLDRAMIGGHCEVFFEDVFVPDAAVLGAVDRGFEYAQVRLGPARMTHVMRWLGAARRGHDIAVAHVAERAGFGSRIGDLGMAQKMIADNEIDIAATRALLVRACWELDRGEHAGNATSIAKTYAAEAIFRIVDRAIQLCGGLGVSDDLPLARLSREVRPFRIYDGPSEVHRWAIAKRAVGAARRAAG GT:EXON 1|1-399:0| BL:SWS:NREP 1 BL:SWS:REP 48->382|ACD11_CHICK|5e-49|36.3|331/777| PROS 349->368|PS00073|ACYL_COA_DH_2|PDOC00070| SEG 15->26|vertrvfvretv| SEG 383->398|rwaiakravgaarraa| BL:PDB:NREP 1 BL:PDB:REP 27->382|2wbiA|7e-48|37.4|348/394| RP:PDB:NREP 1 RP:PDB:REP 3->381|3d9gB|4e-60|18.8|377/431| RP:PFM:NREP 2 RP:PFM:REP 131->183|PF02770|8e-08|56.9|51/53|Acyl-CoA_dh_M| RP:PFM:REP 243->381|PF00441|2e-19|38.1|139/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 242->390|PF00441|2.4e-38|34.2|149/150|Acyl-CoA_dh_1| HM:PFM:REP 131->183|PF02770|3.1e-21|47.1|51/52|Acyl-CoA_dh_M| HM:PFM:REP 10->127|PF02771|3.3e-17|24.8|109/113|Acyl-CoA_dh_N| GO:PFM:NREP 4 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 3->239|2c0uA2|4e-38|19.1|235/259|e.6.1.1| RP:SCP:REP 243->382|1bucA1|7e-26|29.3|140/151|a.29.3.1| HM:SCP:REP 3->240|2c12A2|2.2e-60|35.6|233/0|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 242->392|1bucA1|2e-42|37.7|151/151|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 6035 OP:NHOMOORG 723 OP:PATTERN 44----5887977866-143421C96661-7C-----------------------------3551--- 4556S2-5111745U*jJJ-Ji22ikJJJJJRmhthVi**4c9c1133-11-667658--GFU1CEQKILE--------384A-----11-11-11---41445564545--------------------------65599---93-1-1------------------13-------------67767--1E735555545555555553455545557BA9A11------42-------------------1----------------------------------------------------------------------11315444444444423222221-6-3-6-13-A91596-17---11-3-61-QKKR-----31WKO554PCONI77676775645-44B44D4C97T-4443424545567B7RA8BD5655C8H111111118----875------------------------------LLVL17RHBPBACGND86999AAJBDDDD7FPAWXqkh14FGB94BDDNCFELW--6----34-------212F873VAA-----------765-9-5--7777B965---------------------------43-5A154BA14433334933336394353---21--------41521213334344333-3333333323333333333212-1112454234433242423411222222--1111211-1121---6222225555-HB12---------------GGHDGAB5757-JIHK7H9CBA99BB546-------------3-----341225555555455------12BB98AA----------1-------------------------1--11-1------ ----559-731-AA8B9779667846899475766688877889988554479B666454444-1----1--1-1------11111---474945465557779AB-B55FDTAADD67669D8HA4G7U*D-FBT6944D79HB39856C62G9BBBL9GJ7FBD775ABEHCG1333I32254667C83564E7988 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 382 STR:RPRED 95.7 SQ:SECSTR ccccccccHHHHHHHHHHHHHHHHTGGGHHHHHTTcccHHHHHHTTHHHHHHHHHTTTTGGGccGGGTcccccHHHHHHHHHHHHTTccTHTHHHHHHHHHHHHHHHHcHccHHHHHHHTHHHHccccccEEEcccTTccTcTTccccccEEEEETTEEEEEEEEEccTTTccccEEEEEEEEcccTTcGGGEEEEEEcHHHHHTccGGGEEEEEccccccccEEEEEEEEEEGGGccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTTccHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGGcTTccHHHHHHHHTTTTTccccTTTH################# DISOP:02AL 395-399| PSIPRED ccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHccHHHHHHHcHHHHccHHHHHEEEccccccccccHHHcEEEEEEEccEEEEEEEEEEEEccccccEEEEEEEEcccccccccEEEEEEEcccccEEEccccccccccccccccEEEEccEEEcHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccc //