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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE23
DDBJ      :fadE23       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  89/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:376 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   236->374 1jqiA PDBj 5e-09 39.1 %
:RPS:PDB   15->376 1egcA PDBj 4e-12 14.5 %
:RPS:SCOP  19->94 2c0uA2  e.6.1.1 * 7e-05 20.0 %
:RPS:SCOP  240->376 1siqA1  a.29.3.1 * 9e-10 20.6 %
:HMM:SCOP  10->225 1ivhA2 e.6.1.1 * 8e-22 27.9 %
:HMM:SCOP  236->374 1r2jA1 a.29.3.1 * 1.3e-29 38.8 %
:RPS:PFM   24->94 PF02771 * Acyl-CoA_dh_N 1e-04 39.7 %
:RPS:PFM   240->351 PF00441 * Acyl-CoA_dh_1 2e-09 34.5 %
:HMM:PFM   240->372 PF00441 * Acyl-CoA_dh_1 5.4e-27 28.8 132/150  
:HMM:PFM   20->130 PF02771 * Acyl-CoA_dh_N 1.3e-11 32.4 108/113  
:HMM:PFM   145->179 PF02770 * Acyl-CoA_dh_M 0.00081 34.3 35/52  
:BLT:SWISS 236->374 ACADS_RAT 1e-08 39.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57121.1 GT:GENE fadE23 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2452225..2453355) GB:FROM 2452225 GB:TO 2453355 GB:DIRECTION - GB:GENE fadE23 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD57121.1 LENGTH 376 SQ:AASEQ MTLEVPWPRTEPAALEPGPERIELRDSLRALLARHSDIEQVRTASESELGYSPRLWRLLAEDMSVAAIAVPEDRGGLGYGTAELATVLEECGRALVCEPVLTSAVLGAQALLAAADRDAVADVLAEVLTGATVATVSALDPAIDRLTAEPTAHGWLLTGTVGHVLGGATADLVIATAETPDGVRLFAFRPGPAVTRTPLTVLDPTRGQADITVHRRAALALTDPATTPATVTRLRDLATLAIACEHTGIVERLVDTTVAYTRARHQFGRPIASFQAIKHRLADLLVLLERARSASRYAAAVFAEDPDGARLAVAVAGAVCTDAALTAAAEAVQLHGGVGFTWEHPAHSYYRRILGNEAAHGDARTHRAGVAALLGL GT:EXON 1|1-376:0| BL:SWS:NREP 1 BL:SWS:REP 236->374|ACADS_RAT|1e-08|39.1|138/412| SEG 104->128|avlgaqallaaadrdavadvlaevl| SEG 154->170|gwlltgtvghvlggata| SEG 217->232|aalaltdpattpatvt| SEG 290->300|rarsasryaaa| SEG 312->331|avavagavctdaaltaaaea| BL:PDB:NREP 1 BL:PDB:REP 236->374|1jqiA|5e-09|39.1|138/384| RP:PDB:NREP 1 RP:PDB:REP 15->376|1egcA|4e-12|14.5|358/387| RP:PFM:NREP 2 RP:PFM:REP 24->94|PF02771|1e-04|39.7|68/113|Acyl-CoA_dh_N| RP:PFM:REP 240->351|PF00441|2e-09|34.5|110/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 240->372|PF00441|5.4e-27|28.8|132/150|Acyl-CoA_dh_1| HM:PFM:REP 20->130|PF02771|1.3e-11|32.4|108/113|Acyl-CoA_dh_N| HM:PFM:REP 145->179|PF02770|0.00081|34.3|35/52|Acyl-CoA_dh_M| GO:PFM:NREP 4 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 19->94|2c0uA2|7e-05|20.0|75/259|e.6.1.1| RP:SCP:REP 240->376|1siqA1|9e-10|20.6|136/154|a.29.3.1| HM:SCP:REP 10->225|1ivhA2|8e-22|27.9|215/0|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 236->374|1r2jA1|1.3e-29|38.8|139/153|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 238 OP:NHOMOORG 89 OP:PATTERN -------------------------------------------------------------------- ----1---------37644-46--5644444486865578-8-7----------------112-122--1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2335-------111---1-112-----------------1----4---------------112------------------1-------------------------------------2331-----1---11-11111112111111-1-23363--1111-1----1-1--------------------1----------------------------------------------------------------------1--------2------2------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 370 STR:RPRED 98.4 SQ:SECSTR ######cTTTHHHHccccHHHHHHHHHHHHHHHHHTTTTHHHHHHHcccccccHHHHHHHHHHTcccTTccTTTTcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHTccccEEEccccGGGcccEEEEcccEEEEEEEEEEEETGGGccEEEEEEEcccHEEEEEETTcTTEEEcccccccccTTccEEEEEEEGGGccccTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccccccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccHcHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGcTTcHHHHHHHHHGGGGTTTccHHHHHHHHHHHHHT DISOP:02AL 1-2| PSIPRED ccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEccEEEEEEEEEEEcccccccEEEEEEEEccccEEEEEcccccEEEcccccccccccccEEEEEEcHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcc //