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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE24
DDBJ      :fadE24       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  25/68 : Bacteria  465/915 : Eukaryota  154/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:596 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   41->464 1rx0C PDBj 3e-22 28.1 %
:RPS:PDB   36->575 2ddhA PDBj 8e-57 13.1 %
:RPS:SCOP  41->289 1rx0A2  e.6.1.1 * 3e-32 27.6 %
:RPS:SCOP  296->471 1is2A1  a.29.3.2 * 7e-26 14.0 %
:HMM:SCOP  30->289 2c12A2 e.6.1.1 * 3.7e-50 34.2 %
:HMM:SCOP  295->482 1is2A1 a.29.3.2 * 2.9e-38 31.1 %
:RPS:PFM   292->463 PF00441 * Acyl-CoA_dh_1 3e-17 37.2 %
:HMM:PFM   291->456 PF00441 * Acyl-CoA_dh_1 6.8e-20 28.5 144/150  
:HMM:PFM   161->215 PF02770 * Acyl-CoA_dh_M 1.4e-15 44.0 50/52  
:HMM:PFM   6->34 PF12418 * AcylCoA_DH_N 2.5e-13 41.4 29/34  
:HMM:PFM   41->157 PF02771 * Acyl-CoA_dh_N 9.3e-11 21.4 103/113  
:BLT:SWISS 40->464 ACAD8_MOUSE 1e-24 28.5 %
:PROS 451->468|PS00216|SUGAR_TRANSPORT_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57294.1 GT:GENE fadE24 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2610751..2612541) GB:FROM 2610751 GB:TO 2612541 GB:DIRECTION - GB:GENE fadE24 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD57294.1 LENGTH 596 SQ:AASEQ MRSDLISRRDLEFLLYEWLRVEELTGRERFADHSRETFDGFLDLCEDLATRYFAPHNKANDAQEPRFDGERVTIIPEVKDAVQAFGKANLVGAAMDAEVGGMQLPSVVEAAGFAWFQAANVGTAGYVFLTIGNANLLAAHGSPEQVDRFVKPMVEGRFTGTMCLSEPQAGSSLADIVTRAEPQEDGTYRLFGSKMWISGGDHELTENIVHLVLAKIPGGPAGTKGISLFVVPKYLVDADGSLGARNDVTLAGLNHKMGYRGTVNTVLNFGEGRHTPGGAAGAVGYLVGEPHRGLSYMFHMMNEARLGVGLGATALGYTGYLKSLRYARERQQGRAVTAKDPATPQIPIIEHADVKRMLLAQKSYVEGALALLLYCNRLVDLARTDPASAREHTLLLEILTGVAKSWPSQWCLEANNLAIQVHGGYGYTREYDVEQHYRDNRLNPIHEGTHGIQGMDLLGRKVIQHEGASLRLLAQRIAASVAAARALGGEPAELAEALDASWQRLVTVTTAMLSAGDPAATMANSTIYLEAFGHIVLAWIWLEQAVAAAGHDGDFYAGKRAAARYFFRYELPRTGPQLDLLAALDRTTLEMRDAWF GT:EXON 1|1-596:0| BL:SWS:NREP 1 BL:SWS:REP 40->464|ACAD8_MOUSE|1e-24|28.5|368/413| PROS 451->468|PS00216|SUGAR_TRANSPORT_1|PDOC00190| TM:NTM 2 TM:REGION 496->518| TM:REGION 528->549| SEG 277->282|ggaaga| SEG 472->500|llaqriaasvaaaralggepaelaealda| SEG 578->589|ldllaaldrttl| BL:PDB:NREP 1 BL:PDB:REP 41->464|1rx0C|3e-22|28.1|367/383| RP:PDB:NREP 1 RP:PDB:REP 36->575|2ddhA|8e-57|13.1|498/622| RP:PFM:NREP 1 RP:PFM:REP 292->463|PF00441|3e-17|37.2|148/150|Acyl-CoA_dh_1| HM:PFM:NREP 4 HM:PFM:REP 291->456|PF00441|6.8e-20|28.5|144/150|Acyl-CoA_dh_1| HM:PFM:REP 161->215|PF02770|1.4e-15|44.0|50/52|Acyl-CoA_dh_M| HM:PFM:REP 6->34|PF12418|2.5e-13|41.4|29/34|AcylCoA_DH_N| HM:PFM:REP 41->157|PF02771|9.3e-11|21.4|103/113|Acyl-CoA_dh_N| GO:PFM:NREP 2 GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 41->289|1rx0A2|3e-32|27.6|214/231|e.6.1.1| RP:SCP:REP 296->471|1is2A1|7e-26|14.0|172/189|a.29.3.2| HM:SCP:REP 30->289|2c12A2|3.7e-50|34.2|243/0|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 295->482|1is2A1|2.9e-38|31.1|183/189|a.29.3.2|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 2788 OP:NHOMOORG 644 OP:PATTERN 33-----122222221--2-21-844451-26-----------------------------212---- 2331A------3227FA99-9A11A8999998AEIE8GPL476C---4-----1--21--75C-5695667---------1-------11111111---3-312233212--------------------------34476---63-----------------------1-------------64422---5524444434454444442344214455877611------51------------------------------------------------------------------------------------------1121233333332321211-----3-3-3--3-321335-16---11-2-51-7779-----316754339586588887786865-33533734669-255332322324465756564445657111111114----665-----------------------------18797-5E96B7776885477755BA777766E6EFKJH22AB874687B77ADA235----44----------5552LC4-----------441-6-3--44648833---------------------------22-6824371-2444436544435453344-----1-------1----1-1111111111-1111111111111111111111-----211-22222121211211111-11--1--------------3111112222-8733---------------99979596767-DCDD6988A98A96545-------------2-----22-223533333444-------1554355------------------------------------1--1--1------ ----435-312-223224333332223221323222232333323421222233232222222--------------------------34222222132343633-572A4A36521121365852728U6-75823-1612531323-6218565463323866-33637947-1------1111272122-54447 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 567 STR:RPRED 95.1 SQ:SECSTR ########ccccTTTTcHHHHHHHHHTTcGGGHHHHHHHHHHHHHHHHHHTcGGGccccGGGccHHEEEEEccHHHHTHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHTTcccTTHHHHHTHHHHHccccHHHHHHHHHHHHTTcccEEEEcccTTccccGGGcccEEEEETTTTcccTTcEEccTTTTTcTccTccEEEEEEEEEETTEEEEEEEEEEEcccccHTTTccccTTEEEEEcccccccTTcccEEEEEccEEEEGGGcEEEccccccEEcTTccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccTTEcTTcccccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHcGGGcHHHHHHHHGGGGTccccHHHHHHHHHHHHHHHHHHHHHTccccGGGGGGGGcccccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHTHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHHHHHHTHH##################### DISOP:02AL 1-4| PSIPRED cccccccHHHHHHHHHHHHccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHccccEEEEEEEcccccccHHHcEEEEEEEcccEEEEEEEEEEEEccccccccccEEEEEEEEcccccccccEEEEEEEcccccccccccccccEEEccccccccccccccEEEEEcccEEcHHHccccHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcHHHHc //