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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE25
DDBJ      :fadE25       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  271/915 : Eukaryota  106/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:376 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   22->347 2d29A PDBj 2e-22 28.1 %
:RPS:PDB   4->373 1egcA PDBj 6e-32 19.3 %
:RPS:SCOP  24->217 1rx0A2  e.6.1.1 * 1e-26 18.7 %
:RPS:SCOP  234->371 1siqA1  a.29.3.1 * 3e-08 15.0 %
:HMM:SCOP  2->217 1jqiA2 e.6.1.1 * 4.5e-39 29.6 %
:HMM:SCOP  224->371 1bucA1 a.29.3.1 * 5.5e-14 23.8 %
:RPS:PFM   24->101 PF02771 * Acyl-CoA_dh_N 2e-05 33.3 %
:HMM:PFM   15->104 PF02771 * Acyl-CoA_dh_N 7.4e-13 33.0 88/113  
:HMM:PFM   241->355 PF08028 * Acyl-CoA_dh_2 5.9e-12 23.5 115/134  
:HMM:PFM   126->157 PF02770 * Acyl-CoA_dh_M 0.001 25.0 32/52  
:BLT:SWISS 1->355 YDBM_BACSU 2e-17 26.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57344.1 GT:GENE fadE25 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2659089..2660219) GB:FROM 2659089 GB:TO 2660219 GB:DIRECTION - GB:GENE fadE25 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD57344.1 LENGTH 376 SQ:AASEQ MTTFAAPETTVNWIDRARAVGATLRPEVADRDRTGVISPTAVDTLREHGLTAAGVPVEFGGGGATHAEIGAILRELGRHDPSTAVAFAMHCHLVAAQVWRHKHGADASGVLGKVGAGAILVSTGASDWVASNGRAERVEGGYRVSARKAPASGCEVGTILVTSIRWDAPDGARVLHCAVPLNAPGVRIEQTWDTLGLRATGSHTVVLEDVFVPDAAVSLIRPADVWPPLLNIVMGAAMPLITAAYLGIADGAVDTALALVRGRTDDHVITLTGEMANAHTTAADLVDAMFAASDDLGFDNTDAHAAAILSRKTVAGDQLVTTVRLAMETVGGLGYSRSCDIERRYRDVHGILFHPLPRAKQLRFTGNVLLGHGPLG GT:EXON 1|1-376:0| BL:SWS:NREP 1 BL:SWS:REP 1->355|YDBM_BACSU|2e-17|26.1|341/381| BL:PDB:NREP 1 BL:PDB:REP 22->347|2d29A|2e-22|28.1|320/386| RP:PDB:NREP 1 RP:PDB:REP 4->373|1egcA|6e-32|19.3|363/387| RP:PFM:NREP 1 RP:PFM:REP 24->101|PF02771|2e-05|33.3|78/113|Acyl-CoA_dh_N| HM:PFM:NREP 3 HM:PFM:REP 15->104|PF02771|7.4e-13|33.0|88/113|Acyl-CoA_dh_N| HM:PFM:REP 241->355|PF08028|5.9e-12|23.5|115/134|Acyl-CoA_dh_2| HM:PFM:REP 126->157|PF02770|0.001|25.0|32/52|Acyl-CoA_dh_M| GO:PFM:NREP 2 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| RP:SCP:NREP 2 RP:SCP:REP 24->217|1rx0A2|1e-26|18.7|193/231|e.6.1.1| RP:SCP:REP 234->371|1siqA1|3e-08|15.0|133/154|a.29.3.1| HM:SCP:REP 2->217|1jqiA2|4.5e-39|29.6|216/231|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 224->371|1bucA1|5.5e-14|23.8|143/151|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 671 OP:NHOMOORG 389 OP:PATTERN 11-----1------------1--12221--1------------------------------1-1---- 1--24--1--1---222-------13-----11565657A1334--1-1331312-----23--6-32312-----------------------11---1----12-11-------------------------------1---212--2-----------------1-1-------------21-11---1-211111-111111111122212111-1121--------111111111111111-1-11-1------------------------------------------------------------------------11-222-221-1-----1----1-1-2--1-111-52--1--------1--2114-----214341---1-2-------------22122-142-2-85562--41223-322-2-11-1---11-1111111----2-2-------------------------------351-231123232221222133113333-44336253--12--1222122-31-11---111----------2-2-11---------------------------1----------------------------1---1--1-------------------------------------1---------------------------------1111------1---------------------------------------------------1-1------------------------14-1111211222311-313------------------------1121111111-------------1------------------------------------------------- ----11--11---1-21211221212111--11222122222211111111111221221222--------------------------2321221----23111--21121-211-----1---1-1-141-1111---1--11---------11222-----1----1-1213----------112111---21211 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 370 STR:RPRED 98.4 SQ:SECSTR ###ccccHHHHHHHHHHHHHHHHTTTTHHHHHHHccccHHHHHHHHHHTcccTTccTTTTcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccEEEEcccTTccccGGGcccEEEEcccEEEEEEEEEEEETGGGccEEEEEEEccccTTccEEEEEEETTcTTEEEcccccccccTTccEEEEEEEEEEEEGGGEGccccTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGcTTcHHHHHHHHHGGGGTTTccHHHHHHHHHHHHHHTT### PSIPRED cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccEEcccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccEEEEEEEccEEEEEEEEEEEEccccccEEEEEEEccccccccEEEEEEEcccccEEEccccccccccccccEEEEEccEEccHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHEEHcccccHHHHHHHHHHHHHHcccccc //