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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE26
DDBJ      :fadE26       putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  506/915 : Eukaryota  175/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:430 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   47->397 2wbiA PDBj 2e-66 42.2 %
:RPS:PDB   4->405 3d9fC PDBj 8e-70 23.1 %
:RPS:SCOP  4->237 2c0uA2  e.6.1.1 * 3e-43 25.2 %
:RPS:SCOP  243->397 1siqA1  a.29.3.1 * 1e-24 19.2 %
:HMM:SCOP  4->253 1w07A3 e.6.1.2 * 5.3e-69 37.6 %
:HMM:SCOP  240->394 1bucA1 a.29.3.1 * 3.9e-35 33.1 %
:RPS:PFM   49->129 PF02771 * Acyl-CoA_dh_N 4e-08 40.0 %
:RPS:PFM   134->184 PF02770 * Acyl-CoA_dh_M 1e-08 41.2 %
:RPS:PFM   240->393 PF00441 * Acyl-CoA_dh_1 6e-13 28.9 %
:HMM:PFM   240->393 PF00441 * Acyl-CoA_dh_1 9.4e-32 28.0 150/150  
:HMM:PFM   133->184 PF02770 * Acyl-CoA_dh_M 2.2e-21 46.2 52/52  
:HMM:PFM   12->129 PF02771 * Acyl-CoA_dh_N 1.9e-17 31.2 109/113  
:HMM:PFM   160->209 PF11794 * HpaB_N 0.00094 24.0 50/264  
:BLT:SWISS 12->397 ACD11_RAT 3e-69 41.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57346.1 GT:GENE fadE26 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2661022..2662314) GB:FROM 2661022 GB:TO 2662314 GB:DIRECTION - GB:GENE fadE26 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD57346.1 LENGTH 430 SQ:AASEQ MAWDFETDPEFQQKLDWAAEFVRTDVEPLDLIYPNPYDRSDTAAMALVRPLQEKVKEQGLWACHLGPELGGPGYGQMKLALLNEVLGMSVWAPSVFGCQAPDSGNAEILAHYGTPEQKAKYLQPLLDGEIGSCYVMTEPTGGSDPTLFKTRAVRDGDHWVINGEKWFNSNAEFASFHIVMVVTDPDVSPYQGMSMFIVPAGTPGLEIVKNFHVPGFSEHEGHLRFTDVRVPADHLLGAEGQGFVVAQTRLGGGRVHHAMRTVALVRKAFDMMCERAVSREMRNGRPLAALQMTQERIADSWIEMEQFRLLVLRTAWRIDKEQDYLKVRKDIAAIKVAMPKVMHDIAQRALHLHGAIGVSTDLPFVDMLTYAEVMGLADGPTEVHKITLAKEVLKNYAPGDPVYPSGYRPALREQAREYLAERLEHVVGNL GT:EXON 1|1-430:0| BL:SWS:NREP 1 BL:SWS:REP 12->397|ACD11_RAT|3e-69|41.2|381/779| BL:PDB:NREP 1 BL:PDB:REP 47->397|2wbiA|2e-66|42.2|346/394| RP:PDB:NREP 1 RP:PDB:REP 4->405|3d9fC|8e-70|23.1|398/430| RP:PFM:NREP 3 RP:PFM:REP 49->129|PF02771|4e-08|40.0|80/113|Acyl-CoA_dh_N| RP:PFM:REP 134->184|PF02770|1e-08|41.2|51/53|Acyl-CoA_dh_M| RP:PFM:REP 240->393|PF00441|6e-13|28.9|149/150|Acyl-CoA_dh_1| HM:PFM:NREP 4 HM:PFM:REP 240->393|PF00441|9.4e-32|28.0|150/150|Acyl-CoA_dh_1| HM:PFM:REP 133->184|PF02770|2.2e-21|46.2|52/52|Acyl-CoA_dh_M| HM:PFM:REP 12->129|PF02771|1.9e-17|31.2|109/113|Acyl-CoA_dh_N| HM:PFM:REP 160->209|PF11794|0.00094|24.0|50/264|HpaB_N| GO:PFM:NREP 6 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 4->237|2c0uA2|3e-43|25.2|230/259|e.6.1.1| RP:SCP:REP 243->397|1siqA1|1e-24|19.2|151/154|a.29.3.1| HM:SCP:REP 4->253|1w07A3|5.3e-69|37.6|242/0|e.6.1.2|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 240->394|1bucA1|3.9e-35|33.1|151/151|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 6047 OP:NHOMOORG 711 OP:PATTERN 33----4866866755-243421D96661-7B-----------------------------4551--- 4546S3-5---836W*lMM-Mk22mqMMMMMXonxnXk**4e8i1134-1--556658--GFV1BDRLIME--------264A-----------11---41444464544--------------------------66587---B3-1-1------------------12-------------78967--1B735555545555555553455545557BA9A11------52--1-------------------1-------------------------------------------------------------------11315444444444423222221-6-3-4-13-991596-17---11-3-61-PIIS-----1-SJM332ODPMJ77676774645-33A33C3B98T-3444525445458D7RA8BB4555A7F111111118----884------------------------------JJUL16QGBOA9BCIB9699888IACDDD6EL6SUlic-4CE994ADDLBFFIZ--6----35-------211F662VAC-----------765-A-5--7787B965---------------------------32-6A245BA14222334833326384253---211-------314-1113334344333-3333333323333333332111--1124342344332424224-1222222--1--------------5222226666-IC21---------------HHHEHBD4677-HHGJ9FA9DA79AA636111111111----2-----24-225545455444------12996677----------1-------------------------1--11-1------ ----569-731-AA9CBABC899967B99596976799897999BB976659BC886656564-111--1--1-1------11111---786B7767555898CCC-B65HDTBBEF67669D8HA2J9U*D-EBS5954D78H939856B63G9CBBM9GK7GBD777BAEHDG-232I32254657C93554D9988 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 425 STR:RPRED 98.8 SQ:SECSTR ccccccccHHHHHHHHHHHHHHHHTGGGHHHHHTTcccHHHHHHHHTTHHHHHHHHHTTTTGGGccGGGTcccccHHHHHHHHHHHHTTccTTHHHHHHHHHHHHHHHHHHcccHHHHHHHcHHHHcccccEEEEcccTTccTTTTcTccEEEEETTEEEEEEEEEccTTTTTTTccEEEEEEcccccGGGGEEEEEEcHHHHHTccGGGEEEEEcccccccEEEEEEEEEGGGccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccTTccccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGGcTTccHHHHHHHHTTTTTccccTTTHHHHHHHHHcTTccTTHHHHccHTTTTccHHHHHHHHHHHHH##### PSIPRED ccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHccccEEEEEEcccccccccHHHEEEEEEEEccEEEEEEEEEEEEccccccEEEEEEEccccccccccEEEEEEEcccccEEEEcccccccccccccEEEEccEEccHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHcc //