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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE3
DDBJ      :fadE3        putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  212/915 : Eukaryota  98/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:354 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->347 2jifB PDBj 2e-13 25.3 %
:RPS:PDB   1->350 1egcA PDBj 1e-25 18.4 %
:RPS:SCOP  1->200 1siqA2  e.6.1.1 * 5e-13 18.1 %
:RPS:SCOP  213->350 1bucA1  a.29.3.1 * 2e-11 22.1 %
:HMM:SCOP  1->200 2c12A2 e.6.1.1 * 2e-25 33.5 %
:HMM:SCOP  212->355 1r2jA1 a.29.3.1 * 4.3e-17 23.9 %
:RPS:PFM   30->65 PF02771 * Acyl-CoA_dh_N 4e-04 47.2 %
:RPS:PFM   213->331 PF00441 * Acyl-CoA_dh_1 2e-05 29.7 %
:HMM:PFM   213->343 PF00441 * Acyl-CoA_dh_1 3.4e-15 23.4 124/150  
:HMM:PFM   21->73 PF02771 * Acyl-CoA_dh_N 1.2e-08 43.1 51/113  
:HMM:PFM   109->154 PF02770 * Acyl-CoA_dh_M 3.8e-07 30.4 46/52  
:BLT:SWISS 17->353 ACDSB_BOVIN 7e-15 25.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55291.1 GT:GENE fadE3 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 466028..467092 GB:FROM 466028 GB:TO 467092 GB:DIRECTION + GB:GENE fadE3 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD55291.1 LENGTH 354 SQ:AASEQ MDFTRDEGQDAVAEVVVGLLEREPARDMGLWPSLVETGLLGLALPERFGGDGMGQAEISVLLTELATDAVAVPALPTLGFGLLPLLPVLPDAVAEVVYPEVGKGAVLTAALSEPGRPFTTSPKTTAVADGAVVRVSGHKIAVPYAEEARWLLIPTDAGIALVDGDAEGLTRTASPASGGLPECTVRLADVAIPAERLLPGNLADLHRYAVSAIGSVADGLLKGALTLTAEHLRTRRQFGRPLAEFQAVAQEVADLYVVSRTLHAVAVSASWALAQEEGDADHRARVDDDLDVLAYTVAAELPAAMQKCHHLHGGLGVDITHPMHRYYSQAKDLARWLGGESLRLDRLGARCSSI GT:EXON 1|1-354:0| BL:SWS:NREP 1 BL:SWS:REP 17->353|ACDSB_BOVIN|7e-15|25.7|327/432| SEG 73->90|palptlgfgllpllpvlp| BL:PDB:NREP 1 BL:PDB:REP 16->347|2jifB|2e-13|25.3|324/377| RP:PDB:NREP 1 RP:PDB:REP 1->350|1egcA|1e-25|18.4|343/387| RP:PFM:NREP 2 RP:PFM:REP 30->65|PF02771|4e-04|47.2|36/113|Acyl-CoA_dh_N| RP:PFM:REP 213->331|PF00441|2e-05|29.7|111/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 213->343|PF00441|3.4e-15|23.4|124/150|Acyl-CoA_dh_1| HM:PFM:REP 21->73|PF02771|1.2e-08|43.1|51/113|Acyl-CoA_dh_N| HM:PFM:REP 109->154|PF02770|3.8e-07|30.4|46/52|Acyl-CoA_dh_M| GO:PFM:NREP 4 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 1->200|1siqA2|5e-13|18.1|199/236|e.6.1.1| RP:SCP:REP 213->350|1bucA1|2e-11|22.1|131/151|a.29.3.1| HM:SCP:REP 1->200|2c12A2|2e-25|33.5|200/0|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 212->355|1r2jA1|4.3e-17|23.9|138/153|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 613 OP:NHOMOORG 319 OP:PATTERN 11----1--------1--------211---12------------------------------------ 2-1-4-------1-46533-38--3833333475758ABB-713---------1------544-3211-2-----------------------------------1-1-----------------------------111----------------------------------------------22---11-222222221222322--11--222--111------------------------------------------------------------------------------------------------------1-1-----------------------1--1-22---1--1--------1--2332-------83211-62434----------1-111112121-4-------1-----2112-2--1-11222--------2------1------------------------------5332--1--21-1262111111131-111113214355--2222-122222-24-------1---------------61----------------2------1-1--1---------------------------21-1---124--1-111-1------1---1---------------------------------------------------------------------------------------------------1----------11-----------------111-1--232--222212211-1-11----------------------12-1111---------------1------------------------------------------------------- ----123-----11-1-11111-111111----11-1111-11111--22111111212111---------------------------1-1--------1--111-21121311----1-13--1-1-151--121---2--11--1---1-213111114-121-11--22----1----------11--1121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 351 STR:RPRED 99.2 SQ:SECSTR ccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHTcccTTccTTTTcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHTcccEEEEcccTTcccGGGcccEEEEcccEEEEEEEEEEEETGGGccEEEEEEEccEEEEETTcTTEEEccccccccccEEEEEEEEEEEEGGGccccTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccccccGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGcTTcHHHHHHHHHGGGGTTTccHHHHHHHHHHHH### DISOP:02AL 354-355| PSIPRED ccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEEcccccccccEEEEEEEEccEEEEccEEEEEcccccccEEEEEcccEEEEEEcccccEEEEcccccccccccEEEEccEEccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcc //