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Nocardia farcinica IFM 10152 (nfar0)
Gene : fadE9
DDBJ      :fadE9        putative acyl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  26/68 : Bacteria  466/915 : Eukaryota  155/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:367 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->359 2jifB PDBj 2e-20 25.7 %
:RPS:PDB   24->361 2dvlA PDBj 8e-37 27.9 %
:RPS:SCOP  26->191 1rx0A2  e.6.1.1 * 3e-19 19.3 %
:RPS:SCOP  231->363 1bucA1  a.29.3.1 * 4e-19 33.1 %
:HMM:SCOP  1->214 1bucA2 e.6.1.1 * 2.6e-32 33.3 %
:HMM:SCOP  216->365 1r2jA1 a.29.3.1 * 3e-30 32.7 %
:RPS:PFM   31->107 PF02771 * Acyl-CoA_dh_N 2e-07 44.2 %
:RPS:PFM   109->172 PF04734 * Ceramidase_alk 4e-04 38.1 %
:RPS:PFM   231->343 PF00441 * Acyl-CoA_dh_1 6e-12 39.8 %
:HMM:PFM   226->353 PF00441 * Acyl-CoA_dh_1 5.6e-28 26.0 127/150  
:HMM:PFM   24->115 PF02771 * Acyl-CoA_dh_N 2.9e-17 40.7 91/113  
:HMM:PFM   126->167 PF02770 * Acyl-CoA_dh_M 3.4e-05 21.4 42/52  
:BLT:SWISS 31->350 ACADS_MOUSE 3e-22 27.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55376.1 GT:GENE fadE9 GT:PRODUCT putative acyl-CoA dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(547222..548325) GB:FROM 547222 GB:TO 548325 GB:DIRECTION - GB:GENE fadE9 GB:PRODUCT putative acyl-CoA dehydrogenase GB:PROTEIN_ID BAD55376.1 LENGTH 367 SQ:AASEQ MDFTPTEGQLDLGTLTGEVCGKLVTADRLRELDTAGRFDEPLWAALAETGILAATLPEEVDGGGLGPLEQAAVLRELGKSVAAVPYLWSVVVGAGALARFGSAEQRKWARRAGAGSVVLTAALAEDHNYEPTVPATVAVERDGAWRLTGAKTTVAYADRAARILVPATVSGATGVFLVDPAAAGVRISPQEVVDFSAESAVEFADAPAELVGTLAEGGDILDWLLTRAWFGLAAQQLGTLEQALDLVAGYAREREQFGKAIGSFQAVAQRLADAYIDVQGLRLAVTQAAWRLAEGLSAAEAVHTAKFWAADAGHRVAHTVVHIHGGVGIDRDHIVHNYFTAAKHNEFALGGATDHLRALGALLADPA GT:EXON 1|1-367:0| BL:SWS:NREP 1 BL:SWS:REP 31->350|ACADS_MOUSE|3e-22|27.5|320/412| BL:PDB:NREP 1 BL:PDB:REP 32->359|2jifB|2e-20|25.7|327/377| RP:PDB:NREP 1 RP:PDB:REP 24->361|2dvlA|8e-37|27.9|337/370| RP:PFM:NREP 3 RP:PFM:REP 31->107|PF02771|2e-07|44.2|77/113|Acyl-CoA_dh_N| RP:PFM:REP 109->172|PF04734|4e-04|38.1|63/584|Ceramidase_alk| RP:PFM:REP 231->343|PF00441|6e-12|39.8|113/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 226->353|PF00441|5.6e-28|26.0|127/150|Acyl-CoA_dh_1| HM:PFM:REP 24->115|PF02771|2.9e-17|40.7|91/113|Acyl-CoA_dh_N| HM:PFM:REP 126->167|PF02770|3.4e-05|21.4|42/52|Acyl-CoA_dh_M| GO:PFM:NREP 4 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 26->191|1rx0A2|3e-19|19.3|166/231|e.6.1.1| RP:SCP:REP 231->363|1bucA1|4e-19|33.1|133/151|a.29.3.1| HM:SCP:REP 1->214|1bucA2|2.6e-32|33.3|213/0|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 216->365|1r2jA1|3e-30|32.7|150/153|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 3148 OP:NHOMOORG 647 OP:PATTERN 22----3122222211-1112--97554--55-----------------------------121---- 3335E1-1---224KWM66-6Q11LR66666FQRZRKRfs4R2O--22-11-112-22--ABK-6BDADBA--------1425-----11111-22---11212253223--------------------------44466---83-----------------------1-------------43356---7635555545555555553455445556A85811------42------------------------------------------------------------------------------------------11315444233343423112221-5-3-3-13-861476-16---11-3-51-CCCH-----1-C99221C7EBB55554653532---6--7-355C-222-3-333433574A63753522649111111114----744------------------------------CALC15E66E6678D73333355C7555526F4JIWVS-378562699C7859H--3----22----------9241G85-----------553-7-4--66566365---------------------------32-24-3256-2222232522224252243-------------2-3-1--2223233222-2222222212222222221-------13231333332313113-1121111-----------------2111113233-75-----------------77657473432-BBCD5A77865575213-------------2-----24-223333333444-------1444444----------1-------------------------1--11-1------ ----235-421-33333322222322322-323323222212223232223233333232232--------------------------24233332333133545-622A6E5541232135296-42Aa5-67A212-5-3451132153-73554A2261847154765457111-----2131242141184452 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 367 STR:RPRED 100.0 SQ:SECSTR cTTcccHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTcccHHHHHHHHHTTGGGTTccGGGTcccccHHHHHHHHHHHHHHcHHHHHHHHHHTcHHHHHHccHHHHHHTHHHHHTTcccEEEEccccccccGGGcccEEEEETTEEEEEEEEEEEETTTTccEEEEEEEETTEEEEEEEETTcTTEEEccccccccccEEEEEEEEEEEGEEccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEETTEEGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGcGGGcHHHHHHHHHGGGTTTTccHHHHHHHHHHHcccc DISOP:02AL 367-368| PSIPRED ccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccEEEEEEEcccccccHHHHHEEEEEEccEEEEccEEEEEcccccccEEEEEEEccccEEEEEEEcccccEEEEEccccccccEEEEEEccEEHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccc //